CRISPRone

CRISPRone report for GCA_000211235.1_ASM21123v1

♦ Seq 1: FN668943.1 Clostridium difficile BI1 putative phage or plasmid sequence, complete sequence

⇒Summary: seq-len = 300869 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75935-83678 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 75935-78460 bp Gene: unk Type: unknown Location: 78531-78704 bp Gene: unk Type: unknown Location: 78891-79298 bp Gene: cd09693:cas5 Type: Type-I Location: 79348-80100 bp Gene: pfam05107:cas7b Type: Type-I Location: 80103-81080 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 81239-82918 bp Gene: cd09652:cas6 Type: other Location: 82992-83678 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FN668941.1 Clostridium difficile BI1 chromosome, complete sequence

⇒Summary: seq-len = 4118573 bp; # of CRISPR array = 10; # of cas gene = 24  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1304505-1305459 bp 2 Locus 2: 1513844-1514531 bp 3 Locus 3: 1590475-1594488 bp 4 Locus 4: 1625214-1625508 bp 5 Locus 5: 1717891-1720402 bp 6 Locus 6: 1857676-1858761 bp 7 Locus 7: 2166540-2166634 bp 8 Locus 8: 2208255-2208880 bp 9 Locus 9: 2669127-2677002 bp 10 Locus 10: 3252577-3263626 bp 11 Locus 11: 3499448-3505979 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 Zoom in on locus 3 Zoom in on locus 4 x5 Zoom in on locus 5 x6 x5 Zoom in on locus 6 x17 Zoom in on locus 7 x2 Zoom in on locus 8 x10 Zoom in on locus 9 Zoom in on locus 10 x23 Zoom in on locus 11 x10 CRISPR array Location: 1304505-1305459 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1304505-1305459 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1513844-1514531 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 1513844-1514531 bp Num of repeats: 11 Spacers: s15-s24 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 1590475-1591074 bp Gene: unk Type: unknown Location: 1591242-1591709 bp Gene: COG2378:WYL Type: other Location: 1591814-1592731 bp Gene: cas14:cas14 Type: Type-V Location: 1593370-1594488 bp CRISPR array Location: 1625214-1625508 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1625214-1625508 bp Num of repeats: 5 Spacers: s25-s28 CRISPR array Location: 1717891-1718248 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1717891-1718248 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 1720112-1720402 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1720112-1720402 bp Num of repeats: 5 Spacers: s34-s37 CRISPR array Location: 1857676-1858761 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 1857676-1858761 bp Num of repeats: 17 Spacers: s38-s53 CRISPR array Location: 2166540-2166634 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2166540-2166634 bp Num of repeats: 2 Spacers: s54-s54 CRISPR array Location: 2208255-2208880 bp Num of repeats: 10 Spacers: s55-s63 CRISPR array Location: 2208255-2208880 bp Num of repeats: 10 Spacers: s55-s63 Gene: cd09641:cas3HD Type: Type-I Location: 2669127-2671535 bp Gene: cd09693:cas5 Type: Type-I Location: 2671562-2672368 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2672384-2673397 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2673417-2674892 bp Gene: pfam01881:cas6 Type: other Location: 2674897-2675634 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2675893-2677002 bp CRISPR array Location: 3252577-3254061 bp Num of repeats: 23 Spacers: s64-s85 CRISPR array Location: 3252577-3254061 bp Num of repeats: 23 Spacers: s64-s85 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 3253423-3253656 bp Gene: unk Type: unknown Location: 3253878-3254045 bp Gene: cd09725:cas2 Type: universal Location: 3254245-3254511 bp Gene: cd09722:cas1 Type: universal Location: 3254514-3255494 bp Gene: pfam01930:cas4 Type: Type-I Location: 3255497-3256015 bp Gene: COG1203:cas3 Type: Type-I Location: 3256063-3258384 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 3258395-3259096 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3259098-3260012 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3260014-3261891 bp Gene: pfam01881:cas6 Type: other Location: 3261897-3262691 bp Gene: pfam13280:WYL Type: other Location: 3262712-3263626 bp CRISPR array Location: 3499448-3500070 bp Num of repeats: 10 Spacers: s86-s94 CRISPR array Location: 3499448-3500070 bp Num of repeats: 10 Spacers: s86-s94 Gene: COG1203:cas3 Type: Type-I Location: 3500323-3502308 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3502319-3503389 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 3503410-3504576 bp Gene: pfam01881:cas6 Type: other Location: 3504578-3505342 bp Gene: cd09693:cas5 Type: Type-I Location: 3505437-3505979 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1304505-1305459 bp]: array | spacers
           [Locus range 1513844-1514531 bp]: array | spacers
           [Locus range 1625214-1625508 bp]: array | spacers
           [Locus range 1717891-1718248 bp]: array | spacers
           [Locus range 1720112-1720402 bp]: array | spacers
           [Locus range 1857676-1858761 bp]: array | spacers
           [Locus range 2166540-2166634 bp]: array | spacers
           [Locus range 2208255-2208880 bp]: array | spacers
           [Locus range 3252577-3254061 bp]: array | spacers
           [Locus range 3499448-3500070 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)