CRISPRone

CRISPRone report for GCA_000235905.1_ASM23590v1

♦ Seq 1: JH379326.1 Clostridium difficile 70-100-2010 genomic scaffold Scfld900, whole genome shotgun sequence

⇒Summary: seq-len = 297692 bp; # of CRISPR array = 4; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77349-88619 bp Zoom in on locus 1 x2 x3 x16 x3 CRISPR array Location: 77349-77442 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 77349-77442 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 77515-77674 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 77515-77674 bp Num of repeats: 3 Spacers: s2-s3 CRISPR array Location: 77777-78823 bp Num of repeats: 16 Spacers: s4-s18 CRISPR array Location: 77777-78823 bp Num of repeats: 16 Spacers: s4-s18 CRISPR array Location: 78894-79054 bp Num of repeats: 3 Spacers: s19-s20 CRISPR array Location: 78894-79054 bp Num of repeats: 3 Spacers: s19-s20 Gene: cd09725:cas2 Type: universal Location: 79238-79504 bp Gene: cd09722:cas1 Type: universal Location: 79507-80487 bp Gene: pfam01930:cas4 Type: Type-I Location: 80490-81008 bp Gene: COG1203:cas3 Type: Type-I Location: 81056-83377 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 83388-84089 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 84091-85005 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 85007-86884 bp Gene: pfam01881:cas6 Type: other Location: 86890-87684 bp Gene: pfam13280:WYL Type: other Location: 87705-88619 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 77349-77442 bp]: array | spacers
           [Locus range 77515-77674 bp]: array | spacers
           [Locus range 77777-78823 bp]: array | spacers
           [Locus range 78894-79054 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JH379329.1 Clostridium difficile 70-100-2010 genomic scaffold Scfld1012, whole genome shotgun sequence

⇒Summary: seq-len = 545602 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 57220-58240 bp 2 Locus 2: 219367-227232 bp 3 Locus 3: 300500-300924 bp Zoom in on locus 1 x16 Zoom in on locus 2 Zoom in on locus 3 x7 CRISPR array Location: 57220-58240 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 57220-58240 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09641:cas3HD Type: Type-I Location: 219367-221775 bp Gene: cd09693:cas5 Type: Type-I Location: 221802-222599 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 222615-223628 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 223648-225123 bp Gene: pfam01881:cas6 Type: other Location: 225128-225865 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 226123-227232 bp CRISPR array Location: 300500-300924 bp Num of repeats: 7 Spacers: s16-s21 CRISPR array Location: 300500-300924 bp Num of repeats: 7 Spacers: s16-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 57220-58240 bp]: array | spacers
           [Locus range 300500-300924 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JH379297.1 Clostridium difficile 70-100-2010 genomic scaffold Scfld191, whole genome shotgun sequence

⇒Summary: seq-len = 457754 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185497-185856 bp 2 Locus 2: 393970-394379 bp Zoom in on locus 1 x6 Zoom in on locus 2 x2 x3 CRISPR array Location: 185497-185856 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 185497-185856 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 393970-394064 bp Num of repeats: 2 Spacers: s6-s6 CRISPR array Location: 393970-394064 bp Num of repeats: 2 Spacers: s6-s6 CRISPR array Location: 394215-394379 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 394215-394379 bp Num of repeats: 3 Spacers: s7-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185497-185856 bp]: array | spacers
           [Locus range 393970-394064 bp]: array | spacers
           [Locus range 394215-394379 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JH379245.1 Clostridium difficile 70-100-2010 genomic scaffold Scfld25, whole genome shotgun sequence

⇒Summary: seq-len = 205906 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34793-36240 bp 2 Locus 2: 87152-87312 bp Zoom in on locus 1 x23 Zoom in on locus 2 x3 CRISPR array Location: 34793-36240 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 34793-36240 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 87152-87312 bp Num of repeats: 3 Spacers: s23-s24 CRISPR array Location: 87152-87312 bp Num of repeats: 3 Spacers: s23-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34793-36240 bp]: array | spacers
           [Locus range 87152-87312 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JH379324.1 Clostridium difficile 70-100-2010 genomic scaffold Scfld776, whole genome shotgun sequence

⇒Summary: seq-len = 28723 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17658-18616 bp Zoom in on locus 1 x15 CRISPR array Location: 17658-18616 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 17658-18616 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17658-18616 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JH379325.1 Clostridium difficile 70-100-2010 genomic scaffold Scfld821, whole genome shotgun sequence

⇒Summary: seq-len = 237814 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 198468-199687 bp Zoom in on locus 1 x10 x6 x2 CRISPR array Location: 198468-199089 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 198468-199089 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 199154-199512 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 199154-199512 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 199593-199687 bp Num of repeats: 2 Spacers: s15-s15 CRISPR array Location: 199593-199687 bp Num of repeats: 2 Spacers: s15-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 198468-199089 bp]: array | spacers
           [Locus range 199154-199512 bp]: array | spacers
           [Locus range 199593-199687 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)