CRISPRone

CRISPRone report for GCA_000235925.1_ASM23592v1

♦ Seq 1: JH379222.1 Clostridium difficile 050-P50-2011 genomic scaffold Scfld462, whole genome shotgun sequence

⇒Summary: seq-len = 372567 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182227-182321 bp Zoom in on locus 1 x2 CRISPR array Location: 182227-182321 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182227-182321 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182227-182321 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JH379198.1 Clostridium difficile 050-P50-2011 genomic scaffold Scfld97, whole genome shotgun sequence

⇒Summary: seq-len = 56182 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10168-10787 bp Zoom in on locus 1 x10 CRISPR array Location: 10168-10787 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 10168-10787 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10168-10787 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JH379224.1 Clostridium difficile 050-P50-2011 genomic scaffold Scfld523, whole genome shotgun sequence

⇒Summary: seq-len = 95436 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80264-83319 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 80264-80491 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 80264-80491 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 83158-83319 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 83158-83319 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 80264-80491 bp]: array | spacers
           [Locus range 83158-83319 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: JH379223.1 Clostridium difficile 050-P50-2011 genomic scaffold Scfld494, whole genome shotgun sequence

⇒Summary: seq-len = 102180 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4055-4280 bp Zoom in on locus 1 x4 CRISPR array Location: 4055-4280 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 4055-4280 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4055-4280 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: JH379181.1 Clostridium difficile 050-P50-2011 genomic scaffold Scfld43, whole genome shotgun sequence

⇒Summary: seq-len = 92229 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28658-28819 bp Zoom in on locus 1 x3 CRISPR array Location: 28658-28819 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28658-28819 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28658-28819 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: JH379225.1 Clostridium difficile 050-P50-2011 genomic scaffold Scfld578, whole genome shotgun sequence

⇒Summary: seq-len = 283655 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164413-164832 bp Zoom in on locus 1 x7 CRISPR array Location: 164413-164832 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164413-164832 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164413-164832 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: JH379217.1 Clostridium difficile 050-P50-2011 genomic scaffold Scfld347, whole genome shotgun sequence

⇒Summary: seq-len = 242396 bp; # of CRISPR array = 0; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75168-84891 bp 2 Locus 2: 136101-147059 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 75168-76277 bp Gene: cas14:cas14 Type: Type-V Location: 76430-77602 bp Gene: unk Type: unknown Location: 77630-78088 bp Gene: pfam01881:cas6 Type: other Location: 78402-79139 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 79144-80610 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 80630-81643 bp Gene: cd09693:cas5 Type: Type-I Location: 81659-82456 bp Gene: cd09641:cas3HD Type: Type-I Location: 82483-84891 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 136101-136586 bp Gene: cd06127:DEDDh Type: Type-I Location: 143389-144435 bp Gene: unk Type: unknown Location: 144807-145313 bp Gene: unk Type: unknown Location: 145726-146394 bp Gene: cd06127:DEDDh Type: Type-I Location: 146553-147059 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)