CRISPRone

CRISPRone report for GCA_000273095.1_Bact_frag_CL03T00C08_V1

♦ Seq 1: JH724173.1 Bacteroides fragilis CL03T00C08 genomic scaffold supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 3104543 bp; # of CRISPR array = 0; # of cas gene = 11  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2742464-2755707 bp Zoom in on locus 1 Gene: cls000004:cas6 Type: other Location: 2742464-2743195 bp Gene: unk Type: unknown Location: 2743213-2743839 bp Gene: unk Type: unknown Location: 2743815-2744594 bp Gene: cash17:cash17 Type: Type- Location: 2744639-2746066 bp Gene: unk Type: unknown Location: 2746063-2746542 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 2746556-2747965 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 2747970-2749772 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 2749765-2750904 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 2750924-2751763 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 2751776-2752186 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 2752183-2753133 bp Gene: pfam00078:RT Type: other Location: 2753153-2753884 bp Gene: cd09634:cas1 Type: universal Location: 2753897-2755423 bp Gene: cd09725:cas2 Type: universal Location: 2755417-2755707 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JH724175.1 Bacteroides fragilis CL03T00C08 genomic scaffold supercont1.3, whole genome shotgun sequence

⇒Summary: seq-len = 720339 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 221156-224769 bp Zoom in on locus 1 Gene: cd09692:cas5 Type: Subtype-I-B Location: 221156-221824 bp Gene: unk Type: unknown Location: 221827-222600 bp Gene: unk Type: unknown Location: 222608-223873 bp Gene: pfam13280:WYL Type: other Location: 223870-224769 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: JH724176.1 Bacteroides fragilis CL03T00C08 genomic scaffold supercont1.4, whole genome shotgun sequence

⇒Summary: seq-len = 306809 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 291421-300456 bp Zoom in on locus 1 x2 Gene: cd09643:cas9 Type: Subtype-II-C Location: 291421-295731 bp Gene: unk Type: unknown Location: 295747-296139 bp Gene: unk Type: unknown Location: 296337-296645 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 296765-297697 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 297701-298033 bp CRISPR array Location: 300332-300456 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 300332-300456 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 300332-300456 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)