CRISPRone

CRISPRone report for GCA_000291745.1_ASM29174v1

♦ Seq 1: DF126593.1 Pseudomonas aeruginosa NCMG1179 DNA, contig: scaffold00001, whole genome shotgun sequence

⇒Summary: seq-len = 6910294 bp; # of CRISPR array = 2; # of cas gene = 11  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1762079-1772897 bp 2 Locus 2: 4534282-4541070 bp Zoom in on locus 1 x11 x16 Zoom in on locus 2 CRISPR array Location: 1762079-1762719 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 1762079-1762719 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09641:cas3HD Type: Type-I Location: 1763494-1766175 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 1766178-1767746 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 1767743-1768273 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 1768283-1769425 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 1769427-1770089 bp Gene: pfam08798:cas6e Type: other Location: 1770136-1770675 bp Gene: cd09719:cas1 Type: universal Location: 1770702-1771592 bp Gene: pfam09707:cas2 Type: universal Location: 1771589-1771888 bp CRISPR array Location: 1771953-1772897 bp Num of repeats: 16 Spacers: s11-s25 CRISPR array Location: 1771953-1772897 bp Num of repeats: 16 Spacers: s11-s25 Gene: cd09696:cas3 Type: Subtype-I-U Location: 4534282-4537503 bp Gene: pfam13280:WYL Type: other Location: 4537516-4538424 bp Gene: unk Type: unknown Location: 4538704-4539594 bp Gene: unk Type: unknown Location: 4539729-4540046 bp Gene: mkCas0115:csx3 Type: other Location: 4540039-4541070 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1762079-1762719 bp]: array | spacers
           [Locus range 1771953-1772897 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)