CRISPRone

CRISPRone report for GCA_000297355.1_ASM29735v1

♦ Seq 1: AKZH01000075.1 Pseudomonas aeruginosa E2 Contig0079, whole genome shotgun sequence

⇒Summary: seq-len = 47716 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37424-47602 bp Zoom in on locus 1 x16 x6 CRISPR array Location: 37424-38352 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 37424-38352 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 38534-39097 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39101-40129 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40140-41123 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41110-42411 bp Gene: COG1203:cas3 Type: Type-I Location: 42822-46052 bp Gene: cd09718:cas1 Type: universal Location: 46049-47023 bp CRISPR array Location: 47275-47602 bp Num of repeats: 6 Spacers: s16-s20 CRISPR array Location: 47275-47602 bp Num of repeats: 6 Spacers: s16-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37424-38352 bp]: array | spacers
           [Locus range 47275-47602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AKZH01000040.1 Pseudomonas aeruginosa E2 Contig0043, whole genome shotgun sequence

⇒Summary: seq-len = 31054 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 585-1214 bp Zoom in on locus 1 x11 CRISPR array Location: 585-1214 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 585-1214 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 585-1214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)