CRISPRone

CRISPRone report for GCA_000297695.1_Bact_frag_HMW_610_V1

♦ Seq 1: JH815483.1 Bacteroides fragilis HMW 610 genomic scaffold supercont1.2, whole genome shotgun sequence

⇒Summary: seq-len = 1705465 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106886-107062 bp Zoom in on locus 1 x3 CRISPR array Location: 106886-107062 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 106886-107062 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 106886-107062 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: JH815482.1 Bacteroides fragilis HMW 610 genomic scaffold supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 2437709 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 797656-810677 bp 2 Locus 2: 1987313-1990923 bp Zoom in on locus 1 x3 x9 x3 Zoom in on locus 2 CRISPR array Location: 797656-797812 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 797656-797812 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 801070-801604 bp Num of repeats: 9 Spacers: s3-s10 CRISPR array Location: 801070-801604 bp Num of repeats: 9 Spacers: s3-s10 CRISPR array Location: 802658-802815 bp Num of repeats: 3 Spacers: s11-s12 CRISPR array Location: 802658-802815 bp Num of repeats: 3 Spacers: s11-s12 Gene: cd09725:cas2 Type: universal Location: 803029-803292 bp Gene: cd09722:cas1 Type: universal Location: 803295-804308 bp Gene: pfam01930:cas4 Type: Type-I Location: 804305-804862 bp Gene: mkCas0088:cas7 Type: Subtype-I-B Location: 804882-805940 bp Gene: mkCas0111:cas8b6 Type: Subtype-I-B Location: 805953-807278 bp Gene: COG1203:cas3 Type: Type-I Location: 807282-809441 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 809431-809994 bp Gene: cd09652:cas6 Type: other Location: 810006-810677 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 1987313-1987978 bp Gene: unk Type: unknown Location: 1987981-1988754 bp Gene: unk Type: unknown Location: 1988762-1990027 bp Gene: pfam13280:WYL Type: other Location: 1990024-1990923 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 797656-797812 bp]: array | spacers
           [Locus range 801070-801604 bp]: array | spacers
           [Locus range 802658-802815 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)