CRISPRone

CRISPRone report for GCA_000341565.1_ASM34156v1

♦ Seq 1: CAQZ01000155.1 Pseudomonas aeruginosa 18A WGS project CAQZ00000000 data, contig 18A_c103, whole genome shotgun sequence

⇒Summary: seq-len = 155490 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 139226-139614 bp Zoom in on locus 1 x7 CRISPR array Location: 139226-139614 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 139226-139614 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 139226-139614 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAQZ01000127.1 Pseudomonas aeruginosa 18A WGS project CAQZ00000000 data, contig 18A_c14, whole genome shotgun sequence

⇒Summary: seq-len = 53231 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14190-25456 bp Zoom in on locus 1 x25 x15 CRISPR array Location: 14190-15659 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 14190-15659 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09718:cas1 Type: universal Location: 15919-16893 bp Gene: COG1203:cas3 Type: Type-I Location: 16890-20120 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 20531-21832 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 21819-22802 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 22813-23841 bp Gene: cd09739:cas6f Type: other Location: 23845-24408 bp CRISPR array Location: 24592-25456 bp Num of repeats: 15 Spacers: s25-s38 CRISPR array Location: 24592-25456 bp Num of repeats: 15 Spacers: s25-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 14190-15659 bp]: array | spacers
           [Locus range 24592-25456 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)