CRISPRone

CRISPRone report for GCA_000376285.1_ASM37628v1

♦ Seq 1: AQWV01000067.1 Clostridioides difficile ATCC 9689 = DSM 1296 strain ATCC 9689 B131DRAFT_scaffold_3.4_C, whole genome shotgun sequence

⇒Summary: seq-len = 259970 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3044-3466 bp Zoom in on locus 1 x7 CRISPR array Location: 3044-3466 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 3044-3466 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3044-3466 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AQWV01000065.1 Clostridioides difficile ATCC 9689 = DSM 1296 strain ATCC 9689 B131DRAFT_scaffold_5.6_C, whole genome shotgun sequence

⇒Summary: seq-len = 249623 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56619-57766 bp 2 Locus 2: 231341-231832 bp Zoom in on locus 1 x18 Zoom in on locus 2 x8 CRISPR array Location: 56619-57766 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 56619-57766 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 231341-231832 bp Num of repeats: 8 Spacers: s18-s24 CRISPR array Location: 231341-231832 bp Num of repeats: 8 Spacers: s18-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56619-57766 bp]: array | spacers
           [Locus range 231341-231832 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AQWV01000062.1 Clostridioides difficile ATCC 9689 = DSM 1296 strain ATCC 9689 B131DRAFT_scaffold_8.9_C, whole genome shotgun sequence

⇒Summary: seq-len = 152147 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12325-12748 bp Zoom in on locus 1 x7 CRISPR array Location: 12325-12748 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 12325-12748 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12325-12748 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AQWV01000063.1 Clostridioides difficile ATCC 9689 = DSM 1296 strain ATCC 9689 B131DRAFT_scaffold_7.8_C, whole genome shotgun sequence

⇒Summary: seq-len = 205100 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113271-114155 bp Zoom in on locus 1 x14 CRISPR array Location: 113271-114155 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 113271-114155 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 113271-114155 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AQWV01000068.1 Clostridioides difficile ATCC 9689 = DSM 1296 strain ATCC 9689 B131DRAFT_scaffold_2.3_C, whole genome shotgun sequence

⇒Summary: seq-len = 341604 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 166768-176881 bp Zoom in on locus 1 x9 CRISPR array Location: 166768-167316 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 166768-167316 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 167500-167766 bp Gene: cd09722:cas1 Type: universal Location: 167769-168749 bp Gene: pfam01930:cas4 Type: Type-I Location: 168833-169270 bp Gene: COG1203:cas3 Type: Type-I Location: 169318-171639 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 171650-172351 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 172353-173267 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 173269-175146 bp Gene: pfam01881:cas6 Type: other Location: 175152-175946 bp Gene: pfam13280:WYL Type: other Location: 175967-176881 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 166768-167316 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AQWV01000070.1 Clostridioides difficile ATCC 9689 = DSM 1296 strain ATCC 9689 B131DRAFT_scaffold_0.1_C, whole genome shotgun sequence

⇒Summary: seq-len = 488912 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 162310-170175 bp 2 Locus 2: 243458-244019 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 162310-164718 bp Gene: cd09693:cas5 Type: Type-I Location: 164745-165542 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 165558-166571 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 166591-168066 bp Gene: pfam01881:cas6 Type: other Location: 168071-168808 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 169066-170175 bp CRISPR array Location: 243458-244019 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 243458-244019 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 243458-244019 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)