CRISPRone

CRISPRone report for GCA_000407905.1_Pseu_aeru_MSH-10_V1

♦ Seq 1: KE138672.1 Pseudomonas aeruginosa MSH-10 genomic scaffold acUKG-supercont1.1, whole genome shotgun sequence

⇒Summary: seq-len = 4180504 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 775314-775882 bp 2 Locus 2: 2137422-2146656 bp Zoom in on locus 1 x10 Zoom in on locus 2 x9 x3 CRISPR array Location: 775314-775882 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 775314-775882 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2137422-2137929 bp Num of repeats: 9 Spacers: s10-s17 CRISPR array Location: 2137422-2137929 bp Num of repeats: 9 Spacers: s10-s17 Gene: cd09739:cas6f Type: other Location: 2138112-2138675 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2138679-2139707 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2139718-2140701 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2140688-2141992 bp Gene: COG1203:cas3 Type: Type-I Location: 2142050-2145280 bp Gene: cd09718:cas1 Type: universal Location: 2145277-2146251 bp CRISPR array Location: 2146509-2146656 bp Num of repeats: 3 Spacers: s18-s19 CRISPR array Location: 2146509-2146656 bp Num of repeats: 3 Spacers: s18-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 775314-775882 bp]: array | spacers
           [Locus range 2137422-2137929 bp]: array | spacers
           [Locus range 2146509-2146656 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)