CRISPRone

CRISPRone report for GCA_000412295.1_C_1334

♦ Seq 1: ASQT01000139.1 Pseudomonas aeruginosa str. C 1334 contig139, whole genome shotgun sequence

⇒Summary: seq-len = 9752 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 877-9541 bp Zoom in on locus 1 x5 CRISPR array Location: 877-1145 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 877-1145 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09718:cas1 Type: universal Location: 1402-2376 bp Gene: COG1203:cas3 Type: Type-I Location: 2373-5603 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5661-6965 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6952-7935 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7946-8974 bp Gene: cd09739:cas6f Type: other Location: 8978-9541 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 877-1145 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: ASQT01000126.1 Pseudomonas aeruginosa str. C 1334 contig126, whole genome shotgun sequence

⇒Summary: seq-len = 29607 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-208 bp Zoom in on locus 1 x4 CRISPR array Location: 1-208 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1-208 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-208 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)