CRISPRone

CRISPRone report for GCA_000412415.1_PA_62

♦ Seq 1: ASQW01000031.1 Pseudomonas aeruginosa str. PA 62 contig031, whole genome shotgun sequence

⇒Summary: seq-len = 7882 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5877-6334 bp Zoom in on locus 1 x8 CRISPR array Location: 5877-6334 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 5877-6334 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5877-6334 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: ASQW01000187.1 Pseudomonas aeruginosa str. PA 62 contig187, whole genome shotgun sequence

⇒Summary: seq-len = 7743 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-7661 bp Zoom in on locus 1 Gene: cd09639:cas3 Type: Type-I Location: 2-1948 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 1951-3519 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 3516-4046 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 4056-5198 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 5200-5862 bp Gene: pfam08798:cas6e Type: other Location: 5837-6448 bp Gene: cd09719:cas1 Type: universal Location: 6475-7365 bp Gene: pfam09707:cas2 Type: universal Location: 7362-7661 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)