CRISPRone

CRISPRone report for GCA_000412435.1_MSH_10

♦ Seq 1: ASQX01000126.1 Pseudomonas aeruginosa str. MSH 10 contig126, whole genome shotgun sequence

⇒Summary: seq-len = 47183 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38165-47159 bp Zoom in on locus 1 x5 x3 CRISPR array Location: 38165-38432 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 38165-38432 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09739:cas6f Type: other Location: 38615-39178 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39182-40210 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40221-41204 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41191-42495 bp Gene: COG1203:cas3 Type: Type-I Location: 42553-45783 bp Gene: cd09718:cas1 Type: universal Location: 45780-46754 bp CRISPR array Location: 47012-47159 bp Num of repeats: 3 Spacers: s5-s6 CRISPR array Location: 47012-47159 bp Num of repeats: 3 Spacers: s5-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38165-38432 bp]: array | spacers
           [Locus range 47012-47159 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: ASQX01000445.1 Pseudomonas aeruginosa str. MSH 10 contig445, whole genome shotgun sequence

⇒Summary: seq-len = 1140 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 549-1116 bp Zoom in on locus 1 x10 CRISPR array Location: 549-1116 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 549-1116 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 549-1116 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)