CRISPRone

CRISPRone report for GCA_000412475.1_ASM41247v1

♦ Seq 1: ASQZ01001263.1 Pseudomonas aeruginosa str. J 1532 contig1263, whole genome shotgun sequence

⇒Summary: seq-len = 1526 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 599-1527 bp Zoom in on locus 1 x16 CRISPR array Location: 599-1527 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 599-1527 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 599-1527 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: ASQZ01001469.1 Pseudomonas aeruginosa str. J 1532 contig1469, whole genome shotgun sequence

⇒Summary: seq-len = 317 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-318 bp Zoom in on locus 1 x6 CRISPR array Location: 0-318 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-318 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-318 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: ASQZ01000949.1 Pseudomonas aeruginosa str. J 1532 contig949, whole genome shotgun sequence

⇒Summary: seq-len = 5825 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-5822 bp Zoom in on locus 1 Gene: pfam09614:cas5f Type: Subtype-I-F Location: 3-521 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 508-1812 bp Gene: COG1203:cas3 Type: Type-I Location: 1870-5100 bp Gene: COG1518:cas1 Type: universal Location: 5097-5822 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: ASQZ01000658.1 Pseudomonas aeruginosa str. J 1532 contig658, whole genome shotgun sequence

⇒Summary: seq-len = 2652 bp; # of CRISPR array = 1; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-2662 bp Zoom in on locus 1 x6 Gene: pfam09614:cas5f Type: Subtype-I-F Location: 3-479 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 490-1518 bp Gene: cd09739:cas6f Type: other Location: 1522-2085 bp CRISPR array Location: 2335-2662 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2335-2662 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2335-2662 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)