CRISPRone

CRISPRone report for GCA_000412735.1_pagenome

♦ Seq 1: ASQO01000001.1 Pseudomonas aeruginosa PGPR2 contig001, whole genome shotgun sequence

⇒Summary: seq-len = 6398761 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1398744-1399432 bp 2 Locus 2: 2794625-2804705 bp Zoom in on locus 1 x12 Zoom in on locus 2 x9 x17 CRISPR array Location: 1398744-1399432 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 1398744-1399432 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 2794625-2795134 bp Num of repeats: 9 Spacers: s12-s19 CRISPR array Location: 2794625-2795134 bp Num of repeats: 9 Spacers: s12-s19 Gene: cd09739:cas6f Type: other Location: 2795318-2795881 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2795885-2796913 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2796924-2797907 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 2797894-2799198 bp Gene: COG1203:cas3 Type: Type-I Location: 2799256-2802486 bp Gene: cd09718:cas1 Type: universal Location: 2802483-2803457 bp CRISPR array Location: 2803718-2804705 bp Num of repeats: 17 Spacers: s20-s35 CRISPR array Location: 2803718-2804705 bp Num of repeats: 17 Spacers: s20-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1398744-1399432 bp]: array | spacers
           [Locus range 2794625-2795134 bp]: array | spacers
           [Locus range 2803718-2804705 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)