CRISPRone

CRISPRone report for GCA_000434095.1_MGS47

♦ Seq 1: FR894335.1 Bacteroides fragilis CAG:47 genomic scaffold, scf260, whole genome shotgun sequence

⇒Summary: seq-len = 81725 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80703-81730 bp Zoom in on locus 1 x15 CRISPR array Location: 80703-81730 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 80703-81730 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 80703-81730 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: FR894315.1 Bacteroides fragilis CAG:47 genomic scaffold, scf146, whole genome shotgun sequence

⇒Summary: seq-len = 274269 bp; # of CRISPR array = 0; # of cas gene = 10  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 260889-274132 bp Zoom in on locus 1 Gene: cls000004:cas6 Type: other Location: 260889-261620 bp Gene: unk Type: unknown Location: 261638-262264 bp Gene: unk Type: unknown Location: 262240-263019 bp Gene: cash17:cash17 Type: Type- Location: 263064-264491 bp Gene: unk Type: unknown Location: 264488-264967 bp Gene: mkCas0086:cmr1gr7 Type: Subtype-III-B Location: 264981-266390 bp Gene: pfam12469:cas10 Type: Subtype-III-B Location: 266395-268197 bp Gene: pfam09700:cmr3gr5 Type: Subtype-III-B Location: 268190-269329 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 269349-270188 bp Gene: mkCas0098:cmr5gr11 Type: Subtype-III-B Location: 270201-270611 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 270608-271558 bp Gene: cd09634:cas1 Type: universal Location: 271578-273848 bp Gene: cd09725:cas2 Type: universal Location: 273842-274132 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: FR894309.1 Bacteroides fragilis CAG:47 genomic scaffold, scf157, whole genome shotgun sequence

⇒Summary: seq-len = 132607 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47820-51433 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 47820-48719 bp Gene: unk Type: unknown Location: 48716-49981 bp Gene: unk Type: unknown Location: 49989-50762 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 50765-51433 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)