CRISPRone

CRISPRone report for GCA_000438845.1_ASM43884v1

♦ Seq 1: AUOX01000017.1 Clostridioides difficile ATCC 9689 = DSM 1296 M018DRAFT_scaffold00009.9_C, whole genome shotgun sequence

⇒Summary: seq-len = 154742 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14035-14458 bp Zoom in on locus 1 x7 CRISPR array Location: 14035-14458 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 14035-14458 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14035-14458 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AUOX01000001.1 Clostridioides difficile ATCC 9689 = DSM 1296 M018DRAFT_scaffold00001.1_C, whole genome shotgun sequence

⇒Summary: seq-len = 750479 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257970-258391 bp 2 Locus 2: 423917-431782 bp 3 Locus 3: 505065-505626 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 257970-258391 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 257970-258391 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09641:cas3HD Type: Type-I Location: 423917-426325 bp Gene: cd09693:cas5 Type: Type-I Location: 426352-427149 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 427165-428178 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 428198-429673 bp Gene: pfam01881:cas6 Type: other Location: 429678-430415 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 430673-431782 bp CRISPR array Location: 505065-505626 bp Num of repeats: 9 Spacers: s7-s14 CRISPR array Location: 505065-505626 bp Num of repeats: 9 Spacers: s7-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 257970-258391 bp]: array | spacers
           [Locus range 505065-505626 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AUOX01000002.1 Clostridioides difficile ATCC 9689 = DSM 1296 M018DRAFT_scaffold00002.2_C, whole genome shotgun sequence

⇒Summary: seq-len = 423094 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164714-174801 bp Zoom in on locus 1 x9 Gene: pfam13280:WYL Type: other Location: 164714-165601 bp Gene: pfam01881:cas6 Type: other Location: 165679-166416 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 166422-168299 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 168301-169215 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 169217-169918 bp Gene: COG1203:cas3 Type: Type-I Location: 169929-172250 bp Gene: pfam01930:cas4 Type: Type-I Location: 172265-172735 bp Gene: cd09722:cas1 Type: universal Location: 172819-173799 bp Gene: cd09725:cas2 Type: universal Location: 173802-174068 bp CRISPR array Location: 174252-174801 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 174252-174801 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 174252-174801 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AUOX01000016.1 Clostridioides difficile ATCC 9689 = DSM 1296 M018DRAFT_scaffold00008.8_C, whole genome shotgun sequence

⇒Summary: seq-len = 205503 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113674-114558 bp Zoom in on locus 1 x14 CRISPR array Location: 113674-114558 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 113674-114558 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 113674-114558 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AUOX01000015.1 Clostridioides difficile ATCC 9689 = DSM 1296 M018DRAFT_scaffold00007.7_C, whole genome shotgun sequence

⇒Summary: seq-len = 249623 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56619-57766 bp 2 Locus 2: 231341-231832 bp Zoom in on locus 1 x18 Zoom in on locus 2 x8 CRISPR array Location: 56619-57766 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 56619-57766 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 231341-231832 bp Num of repeats: 8 Spacers: s18-s24 CRISPR array Location: 231341-231832 bp Num of repeats: 8 Spacers: s18-s24 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56619-57766 bp]: array | spacers
           [Locus range 231341-231832 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)