CRISPRone

CRISPRone report for GCA_000448725.2_ASM44872v2

♦ Seq 1: AVGM01000130.1 Clostridioides difficile CD17 gcdCD17.contig.129, whole genome shotgun sequence

⇒Summary: seq-len = 59012 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4146-4835 bp Zoom in on locus 1 x11 CRISPR array Location: 4146-4835 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 4146-4835 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4146-4835 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVGM01000128.1 Clostridioides difficile CD17 gcdCD17.contig.127, whole genome shotgun sequence

⇒Summary: seq-len = 66569 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59628-66126 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 59628-62036 bp Gene: cd09693:cas5 Type: Type-I Location: 62063-62860 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 62876-63889 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 63909-65384 bp Gene: pfam01881:cas6 Type: other Location: 65389-66126 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVGM01000151.1 Clostridioides difficile CD17 gcdCD17.contig.150, whole genome shotgun sequence

⇒Summary: seq-len = 27708 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8495-15512 bp Zoom in on locus 1 x13 CRISPR array Location: 8495-9310 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 8495-9310 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG1203:cas3 Type: Type-I Location: 9876-11858 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 11869-12939 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 12960-14108 bp Gene: pfam01881:cas6 Type: other Location: 14110-14874 bp Gene: cd09693:cas5 Type: Type-I Location: 14865-15512 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8495-9310 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVGM01000067.1 Clostridioides difficile CD17 gcdCD17.contig.66, whole genome shotgun sequence

⇒Summary: seq-len = 44325 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22622-23574 bp Zoom in on locus 1 x15 CRISPR array Location: 22622-23574 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 22622-23574 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22622-23574 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVGM01000124.1 Clostridioides difficile CD17 gcdCD17.contig.123, whole genome shotgun sequence

⇒Summary: seq-len = 13509 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6501-8686 bp Zoom in on locus 1 x5 x2 CRISPR array Location: 6501-6795 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 6501-6795 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 8593-8686 bp Num of repeats: 2 Spacers: s5-s5 CRISPR array Location: 8593-8686 bp Num of repeats: 2 Spacers: s5-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6501-6795 bp]: array | spacers
           [Locus range 8593-8686 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVGM01000060.1 Clostridioides difficile CD17 gcdCD17.contig.59, whole genome shotgun sequence

⇒Summary: seq-len = 64990 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59573-60728 bp Zoom in on locus 1 x18 CRISPR array Location: 59573-60728 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 59573-60728 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59573-60728 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVGM01000145.1 Clostridioides difficile CD17 gcdCD17.contig.144, whole genome shotgun sequence

⇒Summary: seq-len = 52584 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30982-43006 bp Zoom in on locus 1 x38 CRISPR array Location: 30982-33441 bp Num of repeats: 38 Spacers: s1-s37 CRISPR array Location: 30982-33441 bp Num of repeats: 38 Spacers: s1-s37 Gene: cd09725:cas2 Type: universal Location: 33625-33891 bp Gene: cd09722:cas1 Type: universal Location: 33894-34874 bp Gene: pfam01930:cas4 Type: Type-I Location: 34877-35395 bp Gene: cd09641:cas3HD Type: Type-I Location: 35443-37764 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 37775-38476 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 38478-39392 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 39394-41271 bp Gene: pfam01881:cas6 Type: other Location: 41277-42071 bp Gene: pfam13280:WYL Type: other Location: 42092-43006 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 30982-33441 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVGM01000076.1 Clostridioides difficile CD17 gcdCD17.contig.75, whole genome shotgun sequence

⇒Summary: seq-len = 12202 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3128-3489 bp Zoom in on locus 1 x6 CRISPR array Location: 3128-3489 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3128-3489 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3128-3489 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVGM01000123.1 Clostridioides difficile CD17 gcdCD17.contig.122, whole genome shotgun sequence

⇒Summary: seq-len = 9640 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4829-6380 bp Zoom in on locus 1 x24 CRISPR array Location: 4829-6380 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 4829-6380 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4829-6380 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVGM01000080.1 Clostridioides difficile CD17 gcdCD17.contig.79, whole genome shotgun sequence

⇒Summary: seq-len = 47813 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38852-41396 bp Zoom in on locus 1 x39 CRISPR array Location: 38852-41396 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 38852-41396 bp Num of repeats: 39 Spacers: s1-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38852-41396 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)