CRISPRone

CRISPRone report for GCA_000448805.2_ASM44880v2

♦ Seq 1: AVJM01000079.1 Clostridioides difficile DA00189 gcdDA00189.contig.78, whole genome shotgun sequence

⇒Summary: seq-len = 84934 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 81039-81655 bp Zoom in on locus 1 x10 CRISPR array Location: 81039-81655 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 81039-81655 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 81039-81655 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJM01000069.1 Clostridioides difficile DA00189 gcdDA00189.contig.68, whole genome shotgun sequence

⇒Summary: seq-len = 18768 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1061-1221 bp Zoom in on locus 1 x3 CRISPR array Location: 1061-1221 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1061-1221 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1061-1221 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJM01000093.1 Clostridioides difficile DA00189 gcdDA00189.contig.92, whole genome shotgun sequence

⇒Summary: seq-len = 100728 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34528-45599 bp Zoom in on locus 1 x24 CRISPR array Location: 34528-36061 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 34528-36061 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 36245-36511 bp Gene: cd09722:cas1 Type: universal Location: 36514-37494 bp Gene: pfam01930:cas4 Type: Type-I Location: 37497-38015 bp Gene: COG1203:cas3 Type: Type-I Location: 38063-40384 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 40395-41096 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 41098-42012 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 42014-43864 bp Gene: pfam01881:cas6 Type: other Location: 43870-44664 bp Gene: pfam13280:WYL Type: other Location: 44685-45599 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34528-36061 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVJM01000053.1 Clostridioides difficile DA00189 gcdDA00189.contig.52, whole genome shotgun sequence

⇒Summary: seq-len = 57873 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47652-49759 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 47652-47877 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 47652-47877 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 49598-49759 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 49598-49759 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47652-47877 bp]: array | spacers
           [Locus range 49598-49759 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVJM01000084.1 Clostridioides difficile DA00189 gcdDA00189.contig.83, whole genome shotgun sequence

⇒Summary: seq-len = 48717 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4180-4537 bp Zoom in on locus 1 x6 CRISPR array Location: 4180-4537 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4180-4537 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4180-4537 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVJM01000044.1 Clostridioides difficile DA00189 gcdDA00189.contig.43, whole genome shotgun sequence

⇒Summary: seq-len = 169118 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138281-139363 bp Zoom in on locus 1 x17 CRISPR array Location: 138281-139363 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 138281-139363 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138281-139363 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVJM01000095.1 Clostridioides difficile DA00189 gcdDA00189.contig.94, whole genome shotgun sequence

⇒Summary: seq-len = 32660 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12157-12250 bp Zoom in on locus 1 x2 CRISPR array Location: 12157-12250 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 12157-12250 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12157-12250 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVJM01000082.1 Clostridioides difficile DA00189 gcdDA00189.contig.81, whole genome shotgun sequence

⇒Summary: seq-len = 144256 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 137265-143766 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 137265-139673 bp Gene: cd09693:cas5 Type: Type-I Location: 139700-140497 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 140513-141529 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 141549-143024 bp Gene: pfam01881:cas6 Type: other Location: 143029-143766 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVJM01000047.1 Clostridioides difficile DA00189 gcdDA00189.contig.46, whole genome shotgun sequence

⇒Summary: seq-len = 148355 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88413-88906 bp Zoom in on locus 1 x8 CRISPR array Location: 88413-88906 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 88413-88906 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 88413-88906 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVJM01000091.1 Clostridioides difficile DA00189 gcdDA00189.contig.90, whole genome shotgun sequence

⇒Summary: seq-len = 5387 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3471-4356 bp Zoom in on locus 1 x14 CRISPR array Location: 3471-4356 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 3471-4356 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3471-4356 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVJM01000050.1 Clostridioides difficile DA00189 gcdDA00189.contig.49, whole genome shotgun sequence

⇒Summary: seq-len = 29169 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18064-18555 bp Zoom in on locus 1 x8 CRISPR array Location: 18064-18555 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18064-18555 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18064-18555 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: AVJM01000037.1 Clostridioides difficile DA00189 gcdDA00189.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 6179 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3222-5474 bp Zoom in on locus 1 x7 x4 CRISPR array Location: 3222-3646 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 3222-3646 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5250-5474 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 5250-5474 bp Num of repeats: 4 Spacers: s7-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3222-3646 bp]: array | spacers
           [Locus range 5250-5474 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: AVJM01000058.1 Clostridioides difficile DA00189 gcdDA00189.contig.57, whole genome shotgun sequence

⇒Summary: seq-len = 64947 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3812-4962 bp Zoom in on locus 1 x18 CRISPR array Location: 3812-4962 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3812-4962 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3812-4962 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)