CRISPRone

CRISPRone report for GCA_000448865.2_ASM44886v2

♦ Seq 1: AVGK01000011.1 Clostridioides difficile CD9 gcdCD9.contig.10, whole genome shotgun sequence

⇒Summary: seq-len = 155138 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138977-139395 bp Zoom in on locus 1 x7 CRISPR array Location: 138977-139395 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 138977-139395 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138977-139395 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVGK01000012.1 Clostridioides difficile CD9 gcdCD9.contig.11, whole genome shotgun sequence

⇒Summary: seq-len = 295058 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 201796-202617 bp Zoom in on locus 1 x13 CRISPR array Location: 201796-202617 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 201796-202617 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 201796-202617 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVGK01000015.1 Clostridioides difficile CD9 gcdCD9.contig.14, whole genome shotgun sequence

⇒Summary: seq-len = 317236 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 74902-74995 bp Zoom in on locus 1 x2 CRISPR array Location: 74902-74995 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 74902-74995 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 74902-74995 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVGK01000013.1 Clostridioides difficile CD9 gcdCD9.contig.12, whole genome shotgun sequence

⇒Summary: seq-len = 135257 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19714-20338 bp Zoom in on locus 1 x10 CRISPR array Location: 19714-20338 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 19714-20338 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19714-20338 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVGK01000014.1 Clostridioides difficile CD9 gcdCD9.contig.13, whole genome shotgun sequence

⇒Summary: seq-len = 935931 bp; # of CRISPR array = 4; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61026-61907 bp 2 Locus 2: 387501-387794 bp 3 Locus 3: 462667-463750 bp 4 Locus 4: 765055-765875 bp 5 Locus 5: 929252-935741 bp Zoom in on locus 1 x14 Zoom in on locus 2 x5 Zoom in on locus 3 x17 Zoom in on locus 4 x13 Zoom in on locus 5 CRISPR array Location: 61026-61907 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 61026-61907 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 387501-387794 bp Num of repeats: 5 Spacers: s14-s17 CRISPR array Location: 387501-387794 bp Num of repeats: 5 Spacers: s14-s17 CRISPR array Location: 462667-463750 bp Num of repeats: 17 Spacers: s18-s33 CRISPR array Location: 462667-463750 bp Num of repeats: 17 Spacers: s18-s33 CRISPR array Location: 765055-765875 bp Num of repeats: 13 Spacers: s34-s45 CRISPR array Location: 765055-765875 bp Num of repeats: 13 Spacers: s34-s45 Gene: cd09641:cas3HD Type: Type-I Location: 929252-931660 bp Gene: cd09693:cas5 Type: Type-I Location: 931687-932484 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 932500-933513 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 933533-934999 bp Gene: pfam01881:cas6 Type: other Location: 935004-935741 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 61026-61907 bp]: array | spacers
           [Locus range 387501-387794 bp]: array | spacers
           [Locus range 462667-463750 bp]: array | spacers
           [Locus range 765055-765875 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVGK01000019.1 Clostridioides difficile CD9 gcdCD9.contig.18, whole genome shotgun sequence

⇒Summary: seq-len = 851189 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 256983-267207 bp Zoom in on locus 1 x11 CRISPR array Location: 256983-257669 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 256983-257669 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 257853-258119 bp Gene: cd09722:cas1 Type: universal Location: 258122-259102 bp Gene: pfam01930:cas4 Type: Type-I Location: 259105-259623 bp Gene: COG1203:cas3 Type: Type-I Location: 259671-261992 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 262003-262704 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 262706-263620 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 263622-265472 bp Gene: pfam01881:cas6 Type: other Location: 265478-266272 bp Gene: pfam13280:WYL Type: other Location: 266293-267207 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 256983-257669 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)