CRISPRone

CRISPRone report for GCA_000448885.2_ASM44888v2

♦ Seq 1: AVGL01000024.1 Clostridioides difficile CD13 gcdCD13.contig.23, whole genome shotgun sequence

⇒Summary: seq-len = 304297 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 216691-217835 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVGL01000025.1 Clostridioides difficile CD13 gcdCD13.contig.24, whole genome shotgun sequence

⇒Summary: seq-len = 178633 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 122513-123272 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVGL01000047.1 Clostridioides difficile CD13 gcdCD13.contig.46, whole genome shotgun sequence

⇒Summary: seq-len = 329960 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 1365-2385 bp]: array | spacers
           [Locus range 61364-62773 bp]: array | spacers
           [Locus range 286742-286835 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVGL01000032.1 Clostridioides difficile CD13 gcdCD13.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 61712 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 3584-4733 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVGL01000040.1 Clostridioides difficile CD13 gcdCD13.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 5151 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 1312-2198 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVGL01000046.1 Clostridioides difficile CD13 gcdCD13.contig.45, whole genome shotgun sequence

⇒Summary: seq-len = 243952 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 243161-243780 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVGL01000037.1 Clostridioides difficile CD13 gcdCD13.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 103594 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 609-769 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVGL01000042.1 Clostridioides difficile CD13 gcdCD13.contig.41, whole genome shotgun sequence

⇒Summary: seq-len = 237767 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 235194-235751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVGL01000028.1 Clostridioides difficile CD13 gcdCD13.contig.27, whole genome shotgun sequence

⇒Summary: seq-len = 29218 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 18349-18905 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVGL01000001.1 Clostridioides difficile CD13 gcdCD13.contig.0, whole genome shotgun sequence

⇒Summary: seq-len = 2099 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 187-613 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)