CRISPRone

CRISPRone report for GCA_000448905.2_ASM44890v2

♦ Seq 1: AVGN01000024.1 Clostridioides difficile CD18 gcdCD18.contig.24, whole genome shotgun sequence

⇒Summary: seq-len = 8151 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2222-2709 bp Zoom in on locus 1 x8 CRISPR array Location: 2222-2709 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2222-2709 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2222-2709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVGN01000036.1 Clostridioides difficile CD18 gcdCD18.contig.37, whole genome shotgun sequence

⇒Summary: seq-len = 6528 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2643-3265 bp Zoom in on locus 1 x10 CRISPR array Location: 2643-3265 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2643-3265 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2643-3265 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVGN01000028.1 Clostridioides difficile CD18 gcdCD18.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 29303 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18143-18767 bp Zoom in on locus 1 x10 CRISPR array Location: 18143-18767 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 18143-18767 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18143-18767 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVGN01000031.1 Clostridioides difficile CD18 gcdCD18.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 204583 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3890-4903 bp Zoom in on locus 1 x16 CRISPR array Location: 3890-4903 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 3890-4903 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3890-4903 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVGN01000029.1 Clostridioides difficile CD18 gcdCD18.contig.30, whole genome shotgun sequence

⇒Summary: seq-len = 270816 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 136583-137906 bp Zoom in on locus 1 x6 x6 CRISPR array Location: 136583-136944 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 136583-136944 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 137547-137906 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 137547-137906 bp Num of repeats: 6 Spacers: s6-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 136583-136944 bp]: array | spacers
           [Locus range 137547-137906 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVGN01000037.1 Clostridioides difficile CD18 gcdCD18.contig.38, whole genome shotgun sequence

⇒Summary: seq-len = 235779 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154274-162139 bp 2 Locus 2: 235410-235503 bp Zoom in on locus 1 Zoom in on locus 2 x2 Gene: cd09641:cas3HD Type: Type-I Location: 154274-156682 bp Gene: cd09693:cas5 Type: Type-I Location: 156709-157506 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 157522-158535 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 158555-160030 bp Gene: pfam01881:cas6 Type: other Location: 160035-160772 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 161030-162139 bp CRISPR array Location: 235410-235503 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 235410-235503 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 235410-235503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVGN01000039.1 Clostridioides difficile CD18 gcdCD18.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 541263 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252658-263536 bp 2 Locus 2: 486507-493923 bp Zoom in on locus 1 x21 Zoom in on locus 2 x19 CRISPR array Location: 252658-253998 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 252658-253998 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 254182-254448 bp Gene: cd09722:cas1 Type: universal Location: 254451-255431 bp Gene: pfam01930:cas4 Type: Type-I Location: 255434-255952 bp Gene: COG1203:cas3 Type: Type-I Location: 256000-258321 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258332-259033 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259035-259949 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259951-261801 bp Gene: pfam01881:cas6 Type: other Location: 261807-262601 bp Gene: pfam13280:WYL Type: other Location: 262622-263536 bp CRISPR array Location: 486507-487720 bp Num of repeats: 19 Spacers: s21-s38 CRISPR array Location: 486507-487720 bp Num of repeats: 19 Spacers: s21-s38 Gene: COG1203:cas3 Type: Type-I Location: 488287-490269 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 490280-491350 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 491371-492519 bp Gene: pfam01881:cas6 Type: other Location: 492521-493285 bp Gene: cd09693:cas5 Type: Type-I Location: 493276-493923 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252658-253998 bp]: array | spacers
           [Locus range 486507-487720 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVGN01000033.1 Clostridioides difficile CD18 gcdCD18.contig.34, whole genome shotgun sequence

⇒Summary: seq-len = 108655 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5824-5918 bp Zoom in on locus 1 x2 CRISPR array Location: 5824-5918 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 5824-5918 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5824-5918 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVGN01000027.1 Clostridioides difficile CD18 gcdCD18.contig.27, whole genome shotgun sequence

⇒Summary: seq-len = 116673 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108073-108895 bp Zoom in on locus 1 x13 CRISPR array Location: 108073-108895 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 108073-108895 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 108073-108895 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)