CRISPRone

CRISPRone report for GCA_000448965.2_ASM44896v2

♦ Seq 1: AVGT01000024.1 Clostridioides difficile CD40 gcdCD40.contig.23, whole genome shotgun sequence

⇒Summary: seq-len = 3808 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2288-2581 bp Zoom in on locus 1 x5 CRISPR array Location: 2288-2581 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 2288-2581 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2288-2581 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVGT01000048.1 Clostridioides difficile CD40 gcdCD40.contig.47, whole genome shotgun sequence

⇒Summary: seq-len = 56898 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2438-3849 bp Zoom in on locus 1 x22 CRISPR array Location: 2438-3849 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 2438-3849 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2438-3849 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVGT01000034.1 Clostridioides difficile CD40 gcdCD40.contig.33, whole genome shotgun sequence

⇒Summary: seq-len = 74420 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59313-59474 bp Zoom in on locus 1 x3 CRISPR array Location: 59313-59474 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 59313-59474 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59313-59474 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVGT01000078.1 Clostridioides difficile CD40 gcdCD40.contig.77, whole genome shotgun sequence

⇒Summary: seq-len = 221181 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90475-100588 bp Zoom in on locus 1 x9 CRISPR array Location: 90475-91023 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 90475-91023 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 91207-91473 bp Gene: cd09722:cas1 Type: universal Location: 91476-92456 bp Gene: pfam01930:cas4 Type: Type-I Location: 92540-92977 bp Gene: COG1203:cas3 Type: Type-I Location: 93025-95346 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 95357-96058 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 96060-96974 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 96976-98853 bp Gene: pfam01881:cas6 Type: other Location: 98859-99653 bp Gene: pfam13280:WYL Type: other Location: 99674-100588 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 90475-91023 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVGT01000059.1 Clostridioides difficile CD40 gcdCD40.contig.58, whole genome shotgun sequence

⇒Summary: seq-len = 25904 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5773-5866 bp Zoom in on locus 1 x2 CRISPR array Location: 5773-5866 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 5773-5866 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5773-5866 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVGT01000041.1 Clostridioides difficile CD40 gcdCD40.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 14176 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3128-3620 bp Zoom in on locus 1 x8 CRISPR array Location: 3128-3620 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3128-3620 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3128-3620 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVGT01000072.1 Clostridioides difficile CD40 gcdCD40.contig.71, whole genome shotgun sequence

⇒Summary: seq-len = 6310 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3986-4481 bp Zoom in on locus 1 x8 CRISPR array Location: 3986-4481 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3986-4481 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3986-4481 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVGT01000025.1 Clostridioides difficile CD40 gcdCD40.contig.24, whole genome shotgun sequence

⇒Summary: seq-len = 5330 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1246-3978 bp Zoom in on locus 1 x2 x5 CRISPR array Location: 1246-1338 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1246-1338 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 3686-3978 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 3686-3978 bp Num of repeats: 5 Spacers: s2-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1246-1338 bp]: array | spacers
           [Locus range 3686-3978 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVGT01000069.1 Clostridioides difficile CD40 gcdCD40.contig.68, whole genome shotgun sequence

⇒Summary: seq-len = 4738 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1063-1484 bp Zoom in on locus 1 x7 CRISPR array Location: 1063-1484 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1063-1484 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1063-1484 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVGT01000037.1 Clostridioides difficile CD40 gcdCD40.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 166200 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113672-114491 bp Zoom in on locus 1 x13 CRISPR array Location: 113672-114491 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 113672-114491 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 113672-114491 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVGT01000071.1 Clostridioides difficile CD40 gcdCD40.contig.70, whole genome shotgun sequence

⇒Summary: seq-len = 133155 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56242-64107 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 56242-58650 bp Gene: cd09693:cas5 Type: Type-I Location: 58677-59474 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 59490-60503 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 60523-61998 bp Gene: pfam01881:cas6 Type: other Location: 62003-62740 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 62998-64107 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)