CRISPRone

CRISPRone report for GCA_000448985.2_ASM44898v2

♦ Seq 1: AVGU01000019.1 Clostridioides difficile CD41 gcdCD41.contig.19, whole genome shotgun sequence

⇒Summary: seq-len = 240560 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39985-41201 bp Zoom in on locus 1 x19 CRISPR array Location: 39985-41201 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 39985-41201 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 39985-41201 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVGU01000016.1 Clostridioides difficile CD41 gcdCD41.contig.16, whole genome shotgun sequence

⇒Summary: seq-len = 29405 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17835-18925 bp Zoom in on locus 1 x17 CRISPR array Location: 17835-18925 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 17835-18925 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17835-18925 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVGU01000015.1 Clostridioides difficile CD41 gcdCD41.contig.15, whole genome shotgun sequence

⇒Summary: seq-len = 458515 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185866-186225 bp 2 Locus 2: 394339-394634 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 CRISPR array Location: 185866-186225 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 185866-186225 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 394339-394634 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 394339-394634 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185866-186225 bp]: array | spacers
           [Locus range 394339-394634 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVGU01000023.1 Clostridioides difficile CD41 gcdCD41.contig.23, whole genome shotgun sequence

⇒Summary: seq-len = 338674 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 159132-166997 bp 2 Locus 2: 241158-241317 bp 3 Locus 3: 292230-293636 bp Zoom in on locus 1 Zoom in on locus 2 x3 Zoom in on locus 3 x22 Gene: cd09641:cas3HD Type: Type-I Location: 159132-161540 bp Gene: cd09693:cas5 Type: Type-I Location: 161567-162364 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 162380-163393 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 163413-164888 bp Gene: pfam01881:cas6 Type: other Location: 164893-165630 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 165888-166997 bp CRISPR array Location: 241158-241317 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 241158-241317 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 292230-293636 bp Num of repeats: 22 Spacers: s3-s23 CRISPR array Location: 292230-293636 bp Num of repeats: 22 Spacers: s3-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 241158-241317 bp]: array | spacers
           [Locus range 292230-293636 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVGU01000024.1 Clostridioides difficile CD41 gcdCD41.contig.24, whole genome shotgun sequence

⇒Summary: seq-len = 362485 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117317-117874 bp Zoom in on locus 1 x9 CRISPR array Location: 117317-117874 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 117317-117874 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 117317-117874 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVGU01000022.1 Clostridioides difficile CD41 gcdCD41.contig.22, whole genome shotgun sequence

⇒Summary: seq-len = 8897 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5023-5840 bp Zoom in on locus 1 x13 CRISPR array Location: 5023-5840 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 5023-5840 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5023-5840 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVGU01000026.1 Clostridioides difficile CD41 gcdCD41.contig.26, whole genome shotgun sequence

⇒Summary: seq-len = 367636 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77400-88437 bp Zoom in on locus 1 x23 CRISPR array Location: 77400-78872 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 77400-78872 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 79056-79322 bp Gene: cd09722:cas1 Type: universal Location: 79325-80305 bp Gene: pfam01930:cas4 Type: Type-I Location: 80308-80826 bp Gene: COG1203:cas3 Type: Type-I Location: 80874-83195 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 83206-83907 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 83909-84823 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 84825-86702 bp Gene: pfam01881:cas6 Type: other Location: 86708-87502 bp Gene: pfam13280:WYL Type: other Location: 87523-88437 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 77400-78872 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)