CRISPRone

CRISPRone report for GCA_000449005.2_ASM44900v2

♦ Seq 1: AVGV01000005.1 Clostridioides difficile CD42 gcdCD42.contig.5, whole genome shotgun sequence

⇒Summary: seq-len = 3272 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 1018-1362 bp]: array | spacers
           [Locus range 2977-3204 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVGV01000216.1 Clostridioides difficile CD42 gcdCD42.contig.217, whole genome shotgun sequence

⇒Summary: seq-len = 17948 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 8528-8621 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVGV01000107.1 Clostridioides difficile CD42 gcdCD42.contig.107, whole genome shotgun sequence

⇒Summary: seq-len = 5190 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 3969-5052 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVGV01000089.1 Clostridioides difficile CD42 gcdCD42.contig.89, whole genome shotgun sequence

⇒Summary: seq-len = 15833 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 9560-9983 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVGV01000183.1 Clostridioides difficile CD42 gcdCD42.contig.183, whole genome shotgun sequence

⇒Summary: seq-len = 4912 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 829-1582 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVGV01000077.1 Clostridioides difficile CD42 gcdCD42.contig.77, whole genome shotgun sequence

⇒Summary: seq-len = 53444 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 46049-47128 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVGV01000206.1 Clostridioides difficile CD42 gcdCD42.contig.207, whole genome shotgun sequence

⇒Summary: seq-len = 27713 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 7293-8571 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVGV01000096.1 Clostridioides difficile CD42 gcdCD42.contig.96, whole genome shotgun sequence

⇒Summary: seq-len = 13799 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 2926-3351 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVGV01000177.1 Clostridioides difficile CD42 gcdCD42.contig.177, whole genome shotgun sequence

⇒Summary: seq-len = 35107 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVGV01000182.1 Clostridioides difficile CD42 gcdCD42.contig.182, whole genome shotgun sequence

⇒Summary: seq-len = 64026 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 4005-4562 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVGV01000168.1 Clostridioides difficile CD42 gcdCD42.contig.168, whole genome shotgun sequence

⇒Summary: seq-len = 8371 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 6234-6394 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: AVGV01000065.1 Clostridioides difficile CD42 gcdCD42.contig.65, whole genome shotgun sequence

⇒Summary: seq-len = 26762 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 173-400 bp]: array | spacers
           [Locus range 502-1058 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)