CRISPRone

CRISPRone report for GCA_000449025.2_ASM44902v2

♦ Seq 1: AVGW01000047.1 Clostridioides difficile CD43 gcdCD43.contig.46, whole genome shotgun sequence

⇒Summary: seq-len = 89597 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59673-59836 bp Zoom in on locus 1 x3 CRISPR array Location: 59673-59836 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 59673-59836 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59673-59836 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVGW01000052.1 Clostridioides difficile CD43 gcdCD43.contig.51, whole genome shotgun sequence

⇒Summary: seq-len = 29261 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18125-18813 bp Zoom in on locus 1 x11 CRISPR array Location: 18125-18813 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 18125-18813 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18125-18813 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVGW01000081.1 Clostridioides difficile CD43 gcdCD43.contig.80, whole genome shotgun sequence

⇒Summary: seq-len = 132729 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90462-100707 bp Zoom in on locus 1 x11 CRISPR array Location: 90462-91142 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 90462-91142 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 91326-91592 bp Gene: cd09722:cas1 Type: universal Location: 91595-92575 bp Gene: pfam01930:cas4 Type: Type-I Location: 92578-93096 bp Gene: COG1203:cas3 Type: Type-I Location: 93144-95465 bp Gene: cd09693:cas5 Type: Type-I Location: 95476-96177 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 96179-97093 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 97095-98972 bp Gene: pfam01881:cas6 Type: other Location: 98978-99715 bp Gene: pfam13280:WYL Type: other Location: 99793-100707 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 90462-91142 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVGW01000082.1 Clostridioides difficile CD43 gcdCD43.contig.81, whole genome shotgun sequence

⇒Summary: seq-len = 30289 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6293-8477 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 6293-6452 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6293-6452 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8253-8477 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 8253-8477 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6293-6452 bp]: array | spacers
           [Locus range 8253-8477 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVGW01000050.1 Clostridioides difficile CD43 gcdCD43.contig.49, whole genome shotgun sequence

⇒Summary: seq-len = 118767 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54594-55018 bp Zoom in on locus 1 x7 CRISPR array Location: 54594-55018 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 54594-55018 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 54594-55018 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVGW01000070.1 Clostridioides difficile CD43 gcdCD43.contig.69, whole genome shotgun sequence

⇒Summary: seq-len = 32878 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29350-29775 bp Zoom in on locus 1 x7 CRISPR array Location: 29350-29775 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 29350-29775 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29350-29775 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVGW01000054.1 Clostridioides difficile CD43 gcdCD43.contig.53, whole genome shotgun sequence

⇒Summary: seq-len = 183801 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 129441-130787 bp Zoom in on locus 1 x21 CRISPR array Location: 129441-130787 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 129441-130787 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 129441-130787 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVGW01000074.1 Clostridioides difficile CD43 gcdCD43.contig.73, whole genome shotgun sequence

⇒Summary: seq-len = 136633 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59690-67555 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 59690-62098 bp Gene: cd09693:cas5 Type: Type-I Location: 62125-62922 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 62938-63951 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 63971-65446 bp Gene: pfam01881:cas6 Type: other Location: 65451-66188 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 66446-67555 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVGW01000064.1 Clostridioides difficile CD43 gcdCD43.contig.63, whole genome shotgun sequence

⇒Summary: seq-len = 36685 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16432-16660 bp Zoom in on locus 1 x4 CRISPR array Location: 16432-16660 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 16432-16660 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16432-16660 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVGW01000065.1 Clostridioides difficile CD43 gcdCD43.contig.64, whole genome shotgun sequence

⇒Summary: seq-len = 53668 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16740-18478 bp Zoom in on locus 1 x27 CRISPR array Location: 16740-18478 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 16740-18478 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16740-18478 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVGW01000075.1 Clostridioides difficile CD43 gcdCD43.contig.74, whole genome shotgun sequence

⇒Summary: seq-len = 5932 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4035-4129 bp Zoom in on locus 1 x2 CRISPR array Location: 4035-4129 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 4035-4129 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4035-4129 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)