CRISPRone

CRISPRone report for GCA_000449045.2_ASM44904v2

♦ Seq 1: AVGX01000090.1 Clostridioides difficile CD44 gcdCD44.contig.89, whole genome shotgun sequence

⇒Summary: seq-len = 90079 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59662-60284 bp Zoom in on locus 1 x10 CRISPR array Location: 59662-60284 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 59662-60284 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59662-60284 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVGX01000176.1 Clostridioides difficile CD44 gcdCD44.contig.175, whole genome shotgun sequence

⇒Summary: seq-len = 98284 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19483-27348 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 19483-21891 bp Gene: cd09693:cas5 Type: Type-I Location: 21918-22715 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 22731-23744 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 23764-25239 bp Gene: pfam01881:cas6 Type: other Location: 25244-25981 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 26239-27348 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVGX01000166.1 Clostridioides difficile CD44 gcdCD44.contig.165, whole genome shotgun sequence

⇒Summary: seq-len = 4433 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 334-1085 bp Zoom in on locus 1 x12 CRISPR array Location: 334-1085 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 334-1085 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 334-1085 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVGX01000202.1 Clostridioides difficile CD44 gcdCD44.contig.201, whole genome shotgun sequence

⇒Summary: seq-len = 21637 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7303-18649 bp Zoom in on locus 1 x28 CRISPR array Location: 7303-9111 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 7303-9111 bp Num of repeats: 28 Spacers: s1-s27 Gene: cd09725:cas2 Type: universal Location: 9295-9561 bp Gene: cd09722:cas1 Type: universal Location: 9564-10544 bp Gene: pfam01930:cas4 Type: Type-I Location: 10547-11065 bp Gene: COG1203:cas3 Type: Type-I Location: 11113-13434 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 13445-14146 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 14148-15062 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 15064-16914 bp Gene: pfam01881:cas6 Type: other Location: 16920-17714 bp Gene: pfam13280:WYL Type: other Location: 17735-18649 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7303-9111 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVGX01000096.1 Clostridioides difficile CD44 gcdCD44.contig.95, whole genome shotgun sequence

⇒Summary: seq-len = 58313 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51364-52322 bp Zoom in on locus 1 x15 CRISPR array Location: 51364-52322 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 51364-52322 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 51364-52322 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVGX01000177.1 Clostridioides difficile CD44 gcdCD44.contig.176, whole genome shotgun sequence

⇒Summary: seq-len = 11072 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3993-4418 bp Zoom in on locus 1 x7 CRISPR array Location: 3993-4418 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 3993-4418 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3993-4418 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVGX01000075.1 Clostridioides difficile CD44 gcdCD44.contig.74, whole genome shotgun sequence

⇒Summary: seq-len = 69140 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35314-36004 bp Zoom in on locus 1 x11 CRISPR array Location: 35314-36004 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 35314-36004 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35314-36004 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVGX01000199.1 Clostridioides difficile CD44 gcdCD44.contig.198, whole genome shotgun sequence

⇒Summary: seq-len = 14220 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10486-11045 bp Zoom in on locus 1 x9 CRISPR array Location: 10486-11045 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 10486-11045 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10486-11045 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVGX01000214.1 Clostridioides difficile CD44 gcdCD44.contig.213, whole genome shotgun sequence

⇒Summary: seq-len = 18057 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8675-8768 bp Zoom in on locus 1 x2 CRISPR array Location: 8675-8768 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8675-8768 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8675-8768 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVGX01000110.1 Clostridioides difficile CD44 gcdCD44.contig.109, whole genome shotgun sequence

⇒Summary: seq-len = 6678 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5331-6546 bp Zoom in on locus 1 x19 CRISPR array Location: 5331-6546 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 5331-6546 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5331-6546 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVGX01000137.1 Clostridioides difficile CD44 gcdCD44.contig.136, whole genome shotgun sequence

⇒Summary: seq-len = 4087 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1987-2081 bp Zoom in on locus 1 x2 CRISPR array Location: 1987-2081 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1987-2081 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1987-2081 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)