CRISPRone

CRISPRone report for GCA_000449065.2_ASM44906v2

♦ Seq 1: AVGY01000080.1 Clostridioides difficile CD45 gcdCD45.contig.79, whole genome shotgun sequence

⇒Summary: seq-len = 36349 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29815-30239 bp Zoom in on locus 1 x7 CRISPR array Location: 29815-30239 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 29815-30239 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29815-30239 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVGY01000093.1 Clostridioides difficile CD45 gcdCD45.contig.92, whole genome shotgun sequence

⇒Summary: seq-len = 47503 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33586-33747 bp Zoom in on locus 1 x3 CRISPR array Location: 33586-33747 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 33586-33747 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33586-33747 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVGY01000147.1 Clostridioides difficile CD45 gcdCD45.contig.146, whole genome shotgun sequence

⇒Summary: seq-len = 225563 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 205734-215913 bp Zoom in on locus 1 x10 CRISPR array Location: 205734-206348 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 205734-206348 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09725:cas2 Type: universal Location: 206532-206798 bp Gene: cd09722:cas1 Type: universal Location: 206801-207781 bp Gene: pfam01930:cas4 Type: Type-I Location: 207784-208302 bp Gene: COG1203:cas3 Type: Type-I Location: 208350-210671 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 210682-211383 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 211385-212299 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 212301-214178 bp Gene: pfam01881:cas6 Type: other Location: 214184-214921 bp Gene: pfam13280:WYL Type: other Location: 214999-215913 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 205734-206348 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVGY01000117.1 Clostridioides difficile CD45 gcdCD45.contig.116, whole genome shotgun sequence

⇒Summary: seq-len = 19116 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5318-6922 bp Zoom in on locus 1 x25 CRISPR array Location: 5318-6922 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 5318-6922 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5318-6922 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVGY01000088.1 Clostridioides difficile CD45 gcdCD45.contig.87, whole genome shotgun sequence

⇒Summary: seq-len = 8527 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3069-3692 bp Zoom in on locus 1 x10 CRISPR array Location: 3069-3692 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 3069-3692 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3069-3692 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVGY01000073.1 Clostridioides difficile CD45 gcdCD45.contig.72, whole genome shotgun sequence

⇒Summary: seq-len = 65909 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59447-59610 bp Zoom in on locus 1 x3 CRISPR array Location: 59447-59610 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 59447-59610 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59447-59610 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVGY01000096.1 Clostridioides difficile CD45 gcdCD45.contig.95, whole genome shotgun sequence

⇒Summary: seq-len = 63682 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62095-63507 bp Zoom in on locus 1 x22 CRISPR array Location: 62095-63507 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 62095-63507 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 62095-63507 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVGY01000134.1 Clostridioides difficile CD45 gcdCD45.contig.133, whole genome shotgun sequence

⇒Summary: seq-len = 8795 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4692-5512 bp Zoom in on locus 1 x13 CRISPR array Location: 4692-5512 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 4692-5512 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4692-5512 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVGY01000141.1 Clostridioides difficile CD45 gcdCD45.contig.140, whole genome shotgun sequence

⇒Summary: seq-len = 58187 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4004-4165 bp Zoom in on locus 1 x3 CRISPR array Location: 4004-4165 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4004-4165 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4004-4165 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVGY01000113.1 Clostridioides difficile CD45 gcdCD45.contig.112, whole genome shotgun sequence

⇒Summary: seq-len = 5147 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1059-1287 bp Zoom in on locus 1 x4 CRISPR array Location: 1059-1287 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1059-1287 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1059-1287 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVGY01000157.1 Clostridioides difficile CD45 gcdCD45.contig.156, whole genome shotgun sequence

⇒Summary: seq-len = 87513 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 72679-72772 bp Zoom in on locus 1 x2 CRISPR array Location: 72679-72772 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 72679-72772 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 72679-72772 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: AVGY01000140.1 Clostridioides difficile CD45 gcdCD45.contig.139, whole genome shotgun sequence

⇒Summary: seq-len = 136719 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59626-67482 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 59626-62034 bp Gene: cd09693:cas5 Type: Type-I Location: 62061-62858 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 62874-63887 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 63907-65373 bp Gene: pfam01881:cas6 Type: other Location: 65378-66115 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 66373-67482 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)