CRISPRone

CRISPRone report for GCA_000449105.2_ASM44910v2

♦ Seq 1: AVHA01000105.1 Clostridioides difficile CD47 gcdCD47.contig.104, whole genome shotgun sequence

⇒Summary: seq-len = 105272 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28299-36164 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28299-30707 bp Gene: cd09693:cas5 Type: Type-I Location: 30734-31531 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31547-32560 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32580-34055 bp Gene: pfam01881:cas6 Type: other Location: 34060-34797 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35055-36164 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVHA01000102.1 Clostridioides difficile CD47 gcdCD47.contig.101, whole genome shotgun sequence

⇒Summary: seq-len = 89383 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 85739-86160 bp Zoom in on locus 1 x7 CRISPR array Location: 85739-86160 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 85739-86160 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 85739-86160 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVHA01000051.1 Clostridioides difficile CD47 gcdCD47.contig.50, whole genome shotgun sequence

⇒Summary: seq-len = 63536 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60571-60732 bp Zoom in on locus 1 x3 CRISPR array Location: 60571-60732 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 60571-60732 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60571-60732 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVHA01000069.1 Clostridioides difficile CD47 gcdCD47.contig.68, whole genome shotgun sequence

⇒Summary: seq-len = 12897 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5364-6514 bp Zoom in on locus 1 x18 CRISPR array Location: 5364-6514 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 5364-6514 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5364-6514 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVHA01000110.1 Clostridioides difficile CD47 gcdCD47.contig.109, whole genome shotgun sequence

⇒Summary: seq-len = 313469 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 248320-258433 bp Zoom in on locus 1 x9 CRISPR array Location: 248320-248868 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 248320-248868 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 249052-249318 bp Gene: cd09722:cas1 Type: universal Location: 249321-250301 bp Gene: pfam01930:cas4 Type: Type-I Location: 250385-250822 bp Gene: COG1203:cas3 Type: Type-I Location: 250870-253191 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 253202-253903 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 253905-254819 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 254821-256698 bp Gene: pfam01881:cas6 Type: other Location: 256704-257498 bp Gene: pfam13280:WYL Type: other Location: 257519-258433 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 248320-248868 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVHA01000043.1 Clostridioides difficile CD47 gcdCD47.contig.42, whole genome shotgun sequence

⇒Summary: seq-len = 3739 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2290-2516 bp Zoom in on locus 1 x4 CRISPR array Location: 2290-2516 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2290-2516 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2290-2516 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVHA01000061.1 Clostridioides difficile CD47 gcdCD47.contig.60, whole genome shotgun sequence

⇒Summary: seq-len = 29159 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18110-18602 bp Zoom in on locus 1 x8 CRISPR array Location: 18110-18602 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18110-18602 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18110-18602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVHA01000056.1 Clostridioides difficile CD47 gcdCD47.contig.55, whole genome shotgun sequence

⇒Summary: seq-len = 166225 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113641-114525 bp Zoom in on locus 1 x14 CRISPR array Location: 113641-114525 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 113641-114525 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 113641-114525 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVHA01000106.1 Clostridioides difficile CD47 gcdCD47.contig.105, whole genome shotgun sequence

⇒Summary: seq-len = 71805 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4136-4631 bp Zoom in on locus 1 x8 CRISPR array Location: 4136-4631 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 4136-4631 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4136-4631 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVHA01000044.1 Clostridioides difficile CD47 gcdCD47.contig.43, whole genome shotgun sequence

⇒Summary: seq-len = 4336 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1354-4087 bp Zoom in on locus 1 x5 x2 CRISPR array Location: 1354-1647 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1354-1647 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 3994-4087 bp Num of repeats: 2 Spacers: s5-s5 CRISPR array Location: 3994-4087 bp Num of repeats: 2 Spacers: s5-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1354-1647 bp]: array | spacers
           [Locus range 3994-4087 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)