CRISPRone

CRISPRone report for GCA_000449125.2_ASM44912v2

♦ Seq 1: AVHB01000040.1 Clostridioides difficile CD49 gcdCD49.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 62919 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59228-60377 bp Zoom in on locus 1 x18 CRISPR array Location: 59228-60377 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 59228-60377 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59228-60377 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVHB01000092.1 Clostridioides difficile CD49 gcdCD49.contig.93, whole genome shotgun sequence

⇒Summary: seq-len = 187507 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 167153-167246 bp Zoom in on locus 1 x2 CRISPR array Location: 167153-167246 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 167153-167246 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 167153-167246 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVHB01000046.1 Clostridioides difficile CD49 gcdCD49.contig.46, whole genome shotgun sequence

⇒Summary: seq-len = 17147 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6042-6533 bp Zoom in on locus 1 x8 CRISPR array Location: 6042-6533 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 6042-6533 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6042-6533 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVHB01000052.1 Clostridioides difficile CD49 gcdCD49.contig.52, whole genome shotgun sequence

⇒Summary: seq-len = 11713 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3988-5138 bp Zoom in on locus 1 x18 CRISPR array Location: 3988-5138 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3988-5138 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3988-5138 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVHB01000081.1 Clostridioides difficile CD49 gcdCD49.contig.82, whole genome shotgun sequence

⇒Summary: seq-len = 48865 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4153-4510 bp Zoom in on locus 1 x6 CRISPR array Location: 4153-4510 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4153-4510 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4153-4510 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVHB01000079.1 Clostridioides difficile CD49 gcdCD49.contig.80, whole genome shotgun sequence

⇒Summary: seq-len = 85009 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 81039-81655 bp Zoom in on locus 1 x10 CRISPR array Location: 81039-81655 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 81039-81655 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 81039-81655 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVHB01000004.1 Clostridioides difficile CD49 gcdCD49.contig.3, whole genome shotgun sequence

⇒Summary: seq-len = 21678 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20846-21074 bp Zoom in on locus 1 x4 CRISPR array Location: 20846-21074 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 20846-21074 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20846-21074 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVHB01000043.1 Clostridioides difficile CD49 gcdCD49.contig.43, whole genome shotgun sequence

⇒Summary: seq-len = 184497 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124547-125040 bp Zoom in on locus 1 x8 CRISPR array Location: 124547-125040 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 124547-125040 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124547-125040 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVHB01000080.1 Clostridioides difficile CD49 gcdCD49.contig.81, whole genome shotgun sequence

⇒Summary: seq-len = 237124 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 159677-167998 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 159677-162085 bp Gene: cd09693:cas5 Type: Type-I Location: 162112-162909 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 162925-163941 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 163961-165436 bp Gene: pfam01881:cas6 Type: other Location: 165441-166178 bp Gene: unk Type: unknown Location: 166279-166455 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166889-167998 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVHB01000016.1 Clostridioides difficile CD49 gcdCD49.contig.15, whole genome shotgun sequence

⇒Summary: seq-len = 37960 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20268-20428 bp Zoom in on locus 1 x3 CRISPR array Location: 20268-20428 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 20268-20428 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20268-20428 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVHB01000091.1 Clostridioides difficile CD49 gcdCD49.contig.92, whole genome shotgun sequence

⇒Summary: seq-len = 115457 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 49255-60391 bp Zoom in on locus 1 x25 CRISPR array Location: 49255-50854 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 49255-50854 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 51038-51304 bp Gene: cd09722:cas1 Type: universal Location: 51307-52104 bp Gene: pfam01930:cas4 Type: Type-I Location: 52289-52807 bp Gene: COG1203:cas3 Type: Type-I Location: 52855-55176 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 55187-55888 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 55890-56804 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 56806-58656 bp Gene: pfam01881:cas6 Type: other Location: 58662-59456 bp Gene: pfam13280:WYL Type: other Location: 59477-60391 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 49255-50854 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)