CRISPRone

CRISPRone report for GCA_000449145.2_ASM44914v2

♦ Seq 1: AVHC01000088.1 Clostridioides difficile CD51 gcdCD51.contig.87, whole genome shotgun sequence

⇒Summary: seq-len = 58709 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4044-4601 bp Zoom in on locus 1 x9 CRISPR array Location: 4044-4601 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4044-4601 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4044-4601 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVHC01000045.1 Clostridioides difficile CD51 gcdCD51.contig.44, whole genome shotgun sequence

⇒Summary: seq-len = 16483 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 652-4003 bp Zoom in on locus 1 x5 x12 CRISPR array Location: 652-943 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 652-943 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 3246-4003 bp Num of repeats: 12 Spacers: s5-s15 CRISPR array Location: 3246-4003 bp Num of repeats: 12 Spacers: s5-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 652-943 bp]: array | spacers
           [Locus range 3246-4003 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVHC01000058.1 Clostridioides difficile CD51 gcdCD51.contig.57, whole genome shotgun sequence

⇒Summary: seq-len = 8210 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3148-3375 bp Zoom in on locus 1 x4 CRISPR array Location: 3148-3375 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3148-3375 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3148-3375 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVHC01000062.1 Clostridioides difficile CD51 gcdCD51.contig.61, whole genome shotgun sequence

⇒Summary: seq-len = 91942 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38607-38968 bp Zoom in on locus 1 x6 CRISPR array Location: 38607-38968 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38607-38968 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38607-38968 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVHC01000073.1 Clostridioides difficile CD51 gcdCD51.contig.72, whole genome shotgun sequence

⇒Summary: seq-len = 23122 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5436-5597 bp Zoom in on locus 1 x3 CRISPR array Location: 5436-5597 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5436-5597 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5436-5597 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVHC01000051.1 Clostridioides difficile CD51 gcdCD51.contig.50, whole genome shotgun sequence

⇒Summary: seq-len = 215308 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185232-185525 bp Zoom in on locus 1 x5 CRISPR array Location: 185232-185525 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 185232-185525 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185232-185525 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVHC01000087.1 Clostridioides difficile CD51 gcdCD51.contig.86, whole genome shotgun sequence

⇒Summary: seq-len = 212923 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135880-143745 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 135880-138288 bp Gene: cd09693:cas5 Type: Type-I Location: 138315-139112 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 139128-140141 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 140161-141636 bp Gene: pfam01881:cas6 Type: other Location: 141641-142378 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 142636-143745 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVHC01000081.1 Clostridioides difficile CD51 gcdCD51.contig.80, whole genome shotgun sequence

⇒Summary: seq-len = 63547 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51335-63325 bp Zoom in on locus 1 x45 Gene: cd09725:cas2 Type: universal Location: 51335-51625 bp Gene: cd09722:cas1 Type: universal Location: 51836-52843 bp Gene: pfam01930:cas4 Type: Type-I Location: 52869-53363 bp CRISPR array Location: 53448-56383 bp Num of repeats: 45 Spacers: s1-s44 CRISPR array Location: 53448-56383 bp Num of repeats: 45 Spacers: s1-s44 Gene: cd09641:cas3HD Type: Type-I Location: 56573-59131 bp Gene: cd09693:cas5 Type: Type-I Location: 59155-59895 bp Gene: pfam05107:cas7b Type: Type-I Location: 59897-60886 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 60879-62618 bp Gene: cd09652:cas6 Type: other Location: 62630-63325 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53448-56383 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVHC01000085.1 Clostridioides difficile CD51 gcdCD51.contig.84, whole genome shotgun sequence

⇒Summary: seq-len = 81726 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77735-78485 bp Zoom in on locus 1 x12 CRISPR array Location: 77735-78485 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 77735-78485 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 77735-78485 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVHC01000052.1 Clostridioides difficile CD51 gcdCD51.contig.51, whole genome shotgun sequence

⇒Summary: seq-len = 184800 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 178332-178688 bp Zoom in on locus 1 x6 CRISPR array Location: 178332-178688 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 178332-178688 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 178332-178688 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)