CRISPRone

CRISPRone report for GCA_000449165.2_ASM44916v2

♦ Seq 1: AVHD01000088.1 Clostridioides difficile CD68 gcdCD68.contig.87, whole genome shotgun sequence

⇒Summary: seq-len = 102046 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97655-98405 bp Zoom in on locus 1 x12 CRISPR array Location: 97655-98405 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 97655-98405 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 97655-98405 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVHD01000085.1 Clostridioides difficile CD68 gcdCD68.contig.84, whole genome shotgun sequence

⇒Summary: seq-len = 63705 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51376-63432 bp Zoom in on locus 1 x46 Gene: cd09725:cas2 Type: universal Location: 51376-51666 bp Gene: cd09722:cas1 Type: universal Location: 51877-52884 bp Gene: pfam01930:cas4 Type: Type-I Location: 52910-53404 bp CRISPR array Location: 53489-56490 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 53489-56490 bp Num of repeats: 46 Spacers: s1-s45 Gene: cd09641:cas3HD Type: Type-I Location: 56680-59238 bp Gene: cd09693:cas5 Type: Type-I Location: 59262-60002 bp Gene: pfam05107:cas7b Type: Type-I Location: 60004-60993 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 60986-62725 bp Gene: cd09652:cas6 Type: other Location: 62737-63432 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53489-56490 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVHD01000079.1 Clostridioides difficile CD68 gcdCD68.contig.78, whole genome shotgun sequence

⇒Summary: seq-len = 31512 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13799-13960 bp Zoom in on locus 1 x3 CRISPR array Location: 13799-13960 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 13799-13960 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13799-13960 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVHD01000060.1 Clostridioides difficile CD68 gcdCD68.contig.59, whole genome shotgun sequence

⇒Summary: seq-len = 113347 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53514-53935 bp Zoom in on locus 1 x7 CRISPR array Location: 53514-53935 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 53514-53935 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53514-53935 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVHD01000063.1 Clostridioides difficile CD68 gcdCD68.contig.62, whole genome shotgun sequence

⇒Summary: seq-len = 28546 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17848-18075 bp Zoom in on locus 1 x4 CRISPR array Location: 17848-18075 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 17848-18075 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17848-18075 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVHD01000092.1 Clostridioides difficile CD68 gcdCD68.contig.91, whole genome shotgun sequence

⇒Summary: seq-len = 271698 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135904-143769 bp 2 Locus 2: 217017-217574 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 135904-138312 bp Gene: cd09693:cas5 Type: Type-I Location: 138339-139136 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 139152-140165 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 140185-141660 bp Gene: pfam01881:cas6 Type: other Location: 141665-142402 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 142660-143769 bp CRISPR array Location: 217017-217574 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 217017-217574 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 217017-217574 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVHD01000069.1 Clostridioides difficile CD68 gcdCD68.contig.68, whole genome shotgun sequence

⇒Summary: seq-len = 25739 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18811-19172 bp Zoom in on locus 1 x6 CRISPR array Location: 18811-19172 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 18811-19172 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18811-19172 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVHD01000058.1 Clostridioides difficile CD68 gcdCD68.contig.57, whole genome shotgun sequence

⇒Summary: seq-len = 154038 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123866-124159 bp Zoom in on locus 1 x5 CRISPR array Location: 123866-124159 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 123866-124159 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 123866-124159 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)