CRISPRone

CRISPRone report for GCA_000449205.2_ASM44920v2

♦ Seq 1: AVKI01000044.1 Clostridioides difficile DA00306 gcdDA00306.contig.44, whole genome shotgun sequence

⇒Summary: seq-len = 2904 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1169-1923 bp Zoom in on locus 1 x12 CRISPR array Location: 1169-1923 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 1169-1923 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1169-1923 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKI01000041.1 Clostridioides difficile DA00306 gcdDA00306.contig.41, whole genome shotgun sequence

⇒Summary: seq-len = 87209 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5071-5231 bp Zoom in on locus 1 x3 CRISPR array Location: 5071-5231 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5071-5231 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5071-5231 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKI01000032.1 Clostridioides difficile DA00306 gcdDA00306.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 29646 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18217-18974 bp Zoom in on locus 1 x12 CRISPR array Location: 18217-18974 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 18217-18974 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18217-18974 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKI01000054.1 Clostridioides difficile DA00306 gcdDA00306.contig.54, whole genome shotgun sequence

⇒Summary: seq-len = 59810 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15736-15829 bp Zoom in on locus 1 x2 CRISPR array Location: 15736-15829 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 15736-15829 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15736-15829 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKI01000045.1 Clostridioides difficile DA00306 gcdDA00306.contig.45, whole genome shotgun sequence

⇒Summary: seq-len = 236288 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158892-167213 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 158892-161300 bp Gene: cd09693:cas5 Type: Type-I Location: 161327-162124 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 162140-163156 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 163176-164651 bp Gene: pfam01881:cas6 Type: other Location: 164656-165393 bp Gene: unk Type: unknown Location: 165494-165670 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166104-167213 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVKI01000046.1 Clostridioides difficile DA00306 gcdDA00306.contig.46, whole genome shotgun sequence

⇒Summary: seq-len = 44833 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 144-501 bp Zoom in on locus 1 x6 CRISPR array Location: 144-501 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 144-501 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 144-501 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVKI01000050.1 Clostridioides difficile DA00306 gcdDA00306.contig.50, whole genome shotgun sequence

⇒Summary: seq-len = 470762 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252983-264185 bp Zoom in on locus 1 x26 CRISPR array Location: 252983-254647 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 252983-254647 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 254831-255097 bp Gene: cd09722:cas1 Type: universal Location: 255100-256080 bp Gene: pfam01930:cas4 Type: Type-I Location: 256083-256601 bp Gene: COG1203:cas3 Type: Type-I Location: 256649-258970 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258981-259682 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259684-260598 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260600-262450 bp Gene: pfam01881:cas6 Type: other Location: 262456-263250 bp Gene: pfam13280:WYL Type: other Location: 263271-264185 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252983-254647 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVKI01000036.1 Clostridioides difficile DA00306 gcdDA00306.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 65192 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3963-5113 bp Zoom in on locus 1 x18 CRISPR array Location: 3963-5113 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3963-5113 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3963-5113 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVKI01000024.1 Clostridioides difficile DA00306 gcdDA00306.contig.24, whole genome shotgun sequence

⇒Summary: seq-len = 10860 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4241-8799 bp Zoom in on locus 1 x5 x4 x8 CRISPR array Location: 4241-4533 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 4241-4533 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 6216-6442 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 6216-6442 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 8304-8799 bp Num of repeats: 8 Spacers: s8-s14 CRISPR array Location: 8304-8799 bp Num of repeats: 8 Spacers: s8-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4241-4533 bp]: array | spacers
           [Locus range 6216-6442 bp]: array | spacers
           [Locus range 8304-8799 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVKI01000030.1 Clostridioides difficile DA00306 gcdDA00306.contig.30, whole genome shotgun sequence

⇒Summary: seq-len = 218152 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3330-3947 bp Zoom in on locus 1 x10 CRISPR array Location: 3330-3947 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 3330-3947 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3330-3947 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVKI01000031.1 Clostridioides difficile DA00306 gcdDA00306.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 188966 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124522-125081 bp Zoom in on locus 1 x9 CRISPR array Location: 124522-125081 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 124522-125081 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124522-125081 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)