CRISPRone

CRISPRone report for GCA_000449245.2_ASM44924v2

♦ Seq 1: AVHL01000071.1 Clostridioides difficile CD109 gcdCD109.contig.70, whole genome shotgun sequence

⇒Summary: seq-len = 19646 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 1971-2131 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVHL01000086.1 Clostridioides difficile CD109 gcdCD109.contig.85, whole genome shotgun sequence

⇒Summary: seq-len = 8212 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 4376-4992 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVHL01000040.1 Clostridioides difficile CD109 gcdCD109.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 1473 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 5-430 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVHL01000108.1 Clostridioides difficile CD109 gcdCD109.contig.107, whole genome shotgun sequence

⇒Summary: seq-len = 45891 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 8672-8765 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVHL01000050.1 Clostridioides difficile CD109 gcdCD109.contig.49, whole genome shotgun sequence

⇒Summary: seq-len = 91852 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 31911-32405 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVHL01000085.1 Clostridioides difficile CD109 gcdCD109.contig.84, whole genome shotgun sequence

⇒Summary: seq-len = 3547 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 1227-1452 bp]: array | spacers
           [Locus range 3136-3427 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVHL01000053.1 Clostridioides difficile CD109 gcdCD109.contig.52, whole genome shotgun sequence

⇒Summary: seq-len = 14241 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 3111-3736 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVHL01000103.1 Clostridioides difficile CD109 gcdCD109.contig.102, whole genome shotgun sequence

⇒Summary: seq-len = 5284 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 3-229 bp]: array | spacers
           [Locus range 2023-2246 bp]: array | spacers
           [Locus range 3851-4274 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVHL01000089.1 Clostridioides difficile CD109 gcdCD109.contig.88, whole genome shotgun sequence

⇒Summary: seq-len = 133867 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVHL01000092.1 Clostridioides difficile CD109 gcdCD109.contig.91, whole genome shotgun sequence

⇒Summary: seq-len = 49056 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 4140-4497 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVHL01000138.1 Clostridioides difficile CD109 gcdCD109.contig.145, whole genome shotgun sequence

⇒Summary: seq-len = 2619 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 566-664 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: AVHL01000058.1 Clostridioides difficile CD109 gcdCD109.contig.57, whole genome shotgun sequence

⇒Summary: seq-len = 36114 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 3758-4908 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: AVHL01000101.1 Clostridioides difficile CD109 gcdCD109.contig.100, whole genome shotgun sequence

⇒Summary: seq-len = 156364 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 90399-91998 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)