CRISPRone

CRISPRone report for GCA_000449265.2_ASM44926v2

♦ Seq 1: AVKF01000188.1 Clostridioides difficile DA00273 gcdDA00273.contig.192, whole genome shotgun sequence

⇒Summary: seq-len = 56400 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28477-36342 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28477-30885 bp Gene: cd09693:cas5 Type: Type-I Location: 30912-31709 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31725-32738 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32758-34233 bp Gene: pfam01881:cas6 Type: other Location: 34238-34975 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35233-36342 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKF01000076.1 Clostridioides difficile DA00273 gcdDA00273.contig.76, whole genome shotgun sequence

⇒Summary: seq-len = 22030 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 317-478 bp Zoom in on locus 1 x3 CRISPR array Location: 317-478 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 317-478 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 317-478 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKF01000064.1 Clostridioides difficile DA00273 gcdDA00273.contig.64, whole genome shotgun sequence

⇒Summary: seq-len = 9250 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135-3165 bp Zoom in on locus 1 x2 x5 CRISPR array Location: 135-229 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 135-229 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2872-3165 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 2872-3165 bp Num of repeats: 5 Spacers: s2-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 135-229 bp]: array | spacers
           [Locus range 2872-3165 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKF01000222.1 Clostridioides difficile DA00273 gcdDA00273.contig.227, whole genome shotgun sequence

⇒Summary: seq-len = 8553 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7400-8540 bp Zoom in on locus 1 x18 CRISPR array Location: 7400-8540 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 7400-8540 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7400-8540 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKF01000080.1 Clostridioides difficile DA00273 gcdDA00273.contig.80, whole genome shotgun sequence

⇒Summary: seq-len = 1695 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1222-1314 bp Zoom in on locus 1 x2 CRISPR array Location: 1222-1314 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1222-1314 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1222-1314 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVKF01000179.1 Clostridioides difficile DA00273 gcdDA00273.contig.183, whole genome shotgun sequence

⇒Summary: seq-len = 3739 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 268-689 bp Zoom in on locus 1 x7 CRISPR array Location: 268-689 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 268-689 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 268-689 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVKF01000101.1 Clostridioides difficile DA00273 gcdDA00273.contig.102, whole genome shotgun sequence

⇒Summary: seq-len = 16210 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9490-10374 bp Zoom in on locus 1 x14 CRISPR array Location: 9490-10374 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 9490-10374 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9490-10374 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVKF01000119.1 Clostridioides difficile DA00273 gcdDA00273.contig.122, whole genome shotgun sequence

⇒Summary: seq-len = 2859 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1964-2847 bp Zoom in on locus 1 x14 CRISPR array Location: 1964-2847 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 1964-2847 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1964-2847 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVKF01000110.1 Clostridioides difficile DA00273 gcdDA00273.contig.111, whole genome shotgun sequence

⇒Summary: seq-len = 14229 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3155-3647 bp Zoom in on locus 1 x8 CRISPR array Location: 3155-3647 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3155-3647 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3155-3647 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVKF01000223.1 Clostridioides difficile DA00273 gcdDA00273.contig.228, whole genome shotgun sequence

⇒Summary: seq-len = 19574 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8-9926 bp Zoom in on locus 1 x6 CRISPR array Location: 8-361 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 8-361 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09725:cas2 Type: universal Location: 545-811 bp Gene: cd09722:cas1 Type: universal Location: 814-1794 bp Gene: pfam01930:cas4 Type: Type-I Location: 1878-2315 bp Gene: COG1203:cas3 Type: Type-I Location: 2363-4684 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4695-5396 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5398-6312 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 6314-8191 bp Gene: pfam01881:cas6 Type: other Location: 8197-8991 bp Gene: pfam13280:WYL Type: other Location: 9012-9926 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8-361 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)