CRISPRone

CRISPRone report for GCA_000449285.1_ASM44928v1

♦ Seq 1: AVHP01000173.1 Clostridioides difficile CD129 gcdCD129.contig.176, whole genome shotgun sequence

⇒Summary: seq-len = 3548 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 1-227 bp]: array | spacers
           [Locus range 2574-2667 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVHP01000273.1 Clostridioides difficile CD129 gcdCD129.contig.277, whole genome shotgun sequence

⇒Summary: seq-len = 4878 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 1767-2586 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVHP01000590.1 Clostridioides difficile CD129 gcdCD129.contig.599, whole genome shotgun sequence

⇒Summary: seq-len = 5944 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 2454-2808 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVHP01000589.1 Clostridioides difficile CD129 gcdCD129.contig.598, whole genome shotgun sequence

⇒Summary: seq-len = 5493 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 2-97 bp]: array | spacers
           [Locus range 2741-3227 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVHP01000644.1 Clostridioides difficile CD129 gcdCD129.contig.653, whole genome shotgun sequence

⇒Summary: seq-len = 14475 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 3861-4356 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVHP01000745.1 Clostridioides difficile CD129 gcdCD129.contig.757, whole genome shotgun sequence

⇒Summary: seq-len = 956 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 665-957 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVHP01000732.1 Clostridioides difficile CD129 gcdCD129.contig.744, whole genome shotgun sequence

⇒Summary: seq-len = 1000 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 906-998 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVHP01000733.1 Clostridioides difficile CD129 gcdCD129.contig.745, whole genome shotgun sequence

⇒Summary: seq-len = 904 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 23-514 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVHP01000629.1 Clostridioides difficile CD129 gcdCD129.contig.638, whole genome shotgun sequence

⇒Summary: seq-len = 1691 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVHP01000747.1 Clostridioides difficile CD129 gcdCD129.contig.759, whole genome shotgun sequence

⇒Summary: seq-len = 5113 bp; # of CRISPR array = 1; # of cas gene = 4  NA 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 665-1213 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVHP01000748.1 Clostridioides difficile CD129 gcdCD129.contig.760, whole genome shotgun sequence

⇒Summary: seq-len = 5084 bp; # of CRISPR array = 0; # of cas gene = 6  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: AVHP01000746.1 Clostridioides difficile CD129 gcdCD129.contig.758, whole genome shotgun sequence

⇒Summary: seq-len = 1857 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 61-1471 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: AVHP01000469.1 Clostridioides difficile CD129 gcdCD129.contig.476, whole genome shotgun sequence

⇒Summary: seq-len = 1514 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 688-781 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 14: AVHP01000917.1 Clostridioides difficile CD129 gcdCD129.contig.934, whole genome shotgun sequence

⇒Summary: seq-len = 1216 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 242-335 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 15: AVHP01000224.1 Clostridioides difficile CD129 gcdCD129.contig.227, whole genome shotgun sequence

⇒Summary: seq-len = 9350 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 8662-8823 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 16: AVHP01000628.1 Clostridioides difficile CD129 gcdCD129.contig.637, whole genome shotgun sequence

⇒Summary: seq-len = 10179 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)