CRISPRone

CRISPRone report for GCA_000449305.2_ASM44930v2

♦ Seq 1: AVHQ01000058.1 Clostridioides difficile CD131 gcdCD131.contig.57, whole genome shotgun sequence

⇒Summary: seq-len = 23775 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18242-18930 bp Zoom in on locus 1 x11 CRISPR array Location: 18242-18930 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 18242-18930 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18242-18930 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVHQ01000048.1 Clostridioides difficile CD131 gcdCD131.contig.47, whole genome shotgun sequence

⇒Summary: seq-len = 66107 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59668-59831 bp Zoom in on locus 1 x3 CRISPR array Location: 59668-59831 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 59668-59831 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59668-59831 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVHQ01000079.1 Clostridioides difficile CD131 gcdCD131.contig.78, whole genome shotgun sequence

⇒Summary: seq-len = 15877 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1935-3673 bp Zoom in on locus 1 x27 CRISPR array Location: 1935-3673 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 1935-3673 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1935-3673 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVHQ01000095.1 Clostridioides difficile CD131 gcdCD131.contig.94, whole genome shotgun sequence

⇒Summary: seq-len = 6321 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4107-4201 bp Zoom in on locus 1 x2 CRISPR array Location: 4107-4201 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 4107-4201 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4107-4201 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVHQ01000075.1 Clostridioides difficile CD131 gcdCD131.contig.74, whole genome shotgun sequence

⇒Summary: seq-len = 3161 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 848-1076 bp Zoom in on locus 1 x4 CRISPR array Location: 848-1076 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 848-1076 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 848-1076 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVHQ01000108.1 Clostridioides difficile CD131 gcdCD131.contig.107, whole genome shotgun sequence

⇒Summary: seq-len = 72640 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7341-17586 bp Zoom in on locus 1 x11 CRISPR array Location: 7341-8021 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 7341-8021 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 8205-8471 bp Gene: cd09722:cas1 Type: universal Location: 8474-9454 bp Gene: pfam01930:cas4 Type: Type-I Location: 9457-9975 bp Gene: COG1203:cas3 Type: Type-I Location: 10023-12344 bp Gene: cd09693:cas5 Type: Type-I Location: 12355-13056 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13058-13972 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 13974-15851 bp Gene: pfam01881:cas6 Type: other Location: 15857-16594 bp Gene: pfam13280:WYL Type: other Location: 16672-17586 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7341-8021 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVHQ01000053.1 Clostridioides difficile CD131 gcdCD131.contig.52, whole genome shotgun sequence

⇒Summary: seq-len = 43783 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37411-37835 bp Zoom in on locus 1 x7 CRISPR array Location: 37411-37835 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 37411-37835 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 37411-37835 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVHQ01000094.1 Clostridioides difficile CD131 gcdCD131.contig.93, whole genome shotgun sequence

⇒Summary: seq-len = 105204 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28302-36167 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28302-30710 bp Gene: cd09693:cas5 Type: Type-I Location: 30737-31534 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31550-32563 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32583-34058 bp Gene: pfam01881:cas6 Type: other Location: 34063-34800 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35058-36167 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVHQ01000106.1 Clostridioides difficile CD131 gcdCD131.contig.105, whole genome shotgun sequence

⇒Summary: seq-len = 30162 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7097-9281 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 7097-7256 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7097-7256 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 9057-9281 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 9057-9281 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7097-7256 bp]: array | spacers
           [Locus range 9057-9281 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVHQ01000064.1 Clostridioides difficile CD131 gcdCD131.contig.63, whole genome shotgun sequence

⇒Summary: seq-len = 60727 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6475-7821 bp Zoom in on locus 1 x21 CRISPR array Location: 6475-7821 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 6475-7821 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6475-7821 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVHQ01000089.1 Clostridioides difficile CD131 gcdCD131.contig.88, whole genome shotgun sequence

⇒Summary: seq-len = 32987 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29346-29771 bp Zoom in on locus 1 x7 CRISPR array Location: 29346-29771 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 29346-29771 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29346-29771 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)