CRISPRone

CRISPRone report for GCA_000449365.2_ASM44936v2

♦ Seq 1: AVHT01000030.1 Clostridioides difficile CD144 gcdCD144.contig.29, whole genome shotgun sequence

⇒Summary: seq-len = 29520 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18239-18996 bp Zoom in on locus 1 x12 CRISPR array Location: 18239-18996 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 18239-18996 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18239-18996 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVHT01000044.1 Clostridioides difficile CD144 gcdCD144.contig.43, whole genome shotgun sequence

⇒Summary: seq-len = 529976 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252763-263900 bp 2 Locus 2: 485951-486044 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 252763-254362 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 252763-254362 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 254546-254812 bp Gene: cd09722:cas1 Type: universal Location: 254815-255795 bp Gene: pfam01930:cas4 Type: Type-I Location: 255798-256316 bp Gene: COG1203:cas3 Type: Type-I Location: 256364-258685 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258696-259397 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259399-260313 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260315-262165 bp Gene: pfam01881:cas6 Type: other Location: 262171-262965 bp Gene: pfam13280:WYL Type: other Location: 262986-263900 bp CRISPR array Location: 485951-486044 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 485951-486044 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252763-254362 bp]: array | spacers
           [Locus range 485951-486044 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVHT01000046.1 Clostridioides difficile CD144 gcdCD144.contig.45, whole genome shotgun sequence

⇒Summary: seq-len = 3290 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97-2283 bp Zoom in on locus 1 x4 x6 CRISPR array Location: 97-320 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 97-320 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1925-2283 bp Num of repeats: 6 Spacers: s4-s8 CRISPR array Location: 1925-2283 bp Num of repeats: 6 Spacers: s4-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 97-320 bp]: array | spacers
           [Locus range 1925-2283 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVHT01000037.1 Clostridioides difficile CD144 gcdCD144.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 93322 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1012-1172 bp Zoom in on locus 1 x3 CRISPR array Location: 1012-1172 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1012-1172 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1012-1172 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVHT01000029.1 Clostridioides difficile CD144 gcdCD144.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 188620 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124159-124718 bp Zoom in on locus 1 x9 CRISPR array Location: 124159-124718 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 124159-124718 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124159-124718 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVHT01000033.1 Clostridioides difficile CD144 gcdCD144.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 7057 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 454-3225 bp Zoom in on locus 1 x4 x12 CRISPR array Location: 454-678 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 454-678 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2471-3225 bp Num of repeats: 12 Spacers: s4-s14 CRISPR array Location: 2471-3225 bp Num of repeats: 12 Spacers: s4-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 454-678 bp]: array | spacers
           [Locus range 2471-3225 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVHT01000040.1 Clostridioides difficile CD144 gcdCD144.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 240761 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 159337-167658 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 159337-161745 bp Gene: cd09693:cas5 Type: Type-I Location: 161772-162569 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 162585-163601 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 163621-165096 bp Gene: pfam01881:cas6 Type: other Location: 165101-165838 bp Gene: unk Type: unknown Location: 165939-166115 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166549-167658 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVHT01000039.1 Clostridioides difficile CD144 gcdCD144.contig.38, whole genome shotgun sequence

⇒Summary: seq-len = 84342 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 81023-81509 bp Zoom in on locus 1 x8 CRISPR array Location: 81023-81509 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 81023-81509 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 81023-81509 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVHT01000042.1 Clostridioides difficile CD144 gcdCD144.contig.41, whole genome shotgun sequence

⇒Summary: seq-len = 45320 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 609-966 bp Zoom in on locus 1 x6 CRISPR array Location: 609-966 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 609-966 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 609-966 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVHT01000034.1 Clostridioides difficile CD144 gcdCD144.contig.33, whole genome shotgun sequence

⇒Summary: seq-len = 69198 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3981-5198 bp Zoom in on locus 1 x19 CRISPR array Location: 3981-5198 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 3981-5198 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3981-5198 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVHT01000028.1 Clostridioides difficile CD144 gcdCD144.contig.27, whole genome shotgun sequence

⇒Summary: seq-len = 272805 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185715-186469 bp Zoom in on locus 1 x12 CRISPR array Location: 185715-186469 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 185715-186469 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185715-186469 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)