CRISPRone

CRISPRone report for GCA_000449385.2_ASM44938v2

♦ Seq 1: AVHU01000055.1 Clostridioides difficile CD149 gcdCD149.contig.54, whole genome shotgun sequence

⇒Summary: seq-len = 23894 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6148-6376 bp Zoom in on locus 1 x4 CRISPR array Location: 6148-6376 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 6148-6376 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6148-6376 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVHU01000071.1 Clostridioides difficile CD149 gcdCD149.contig.70, whole genome shotgun sequence

⇒Summary: seq-len = 294973 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252861-263106 bp Zoom in on locus 1 x11 CRISPR array Location: 252861-253541 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 252861-253541 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 253725-253991 bp Gene: cd09722:cas1 Type: universal Location: 253994-254974 bp Gene: pfam01930:cas4 Type: Type-I Location: 254977-255495 bp Gene: COG1203:cas3 Type: Type-I Location: 255543-257864 bp Gene: cd09693:cas5 Type: Type-I Location: 257875-258576 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258578-259492 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259494-261371 bp Gene: pfam01881:cas6 Type: other Location: 261377-262114 bp Gene: pfam13280:WYL Type: other Location: 262192-263106 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252861-253541 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVHU01000048.1 Clostridioides difficile CD149 gcdCD149.contig.47, whole genome shotgun sequence

⇒Summary: seq-len = 14291 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3155-3843 bp Zoom in on locus 1 x11 CRISPR array Location: 3155-3843 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 3155-3843 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3155-3843 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVHU01000064.1 Clostridioides difficile CD149 gcdCD149.contig.63, whole genome shotgun sequence

⇒Summary: seq-len = 8330 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4694-5119 bp Zoom in on locus 1 x7 CRISPR array Location: 4694-5119 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 4694-5119 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4694-5119 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVHU01000045.1 Clostridioides difficile CD149 gcdCD149.contig.44, whole genome shotgun sequence

⇒Summary: seq-len = 170301 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118204-118561 bp Zoom in on locus 1 x6 CRISPR array Location: 118204-118561 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 118204-118561 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118204-118561 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVHU01000044.1 Clostridioides difficile CD149 gcdCD149.contig.43, whole genome shotgun sequence

⇒Summary: seq-len = 218472 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 131707-131870 bp Zoom in on locus 1 x3 CRISPR array Location: 131707-131870 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 131707-131870 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 131707-131870 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVHU01000066.1 Clostridioides difficile CD149 gcdCD149.contig.65, whole genome shotgun sequence

⇒Summary: seq-len = 213513 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 136573-144438 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 136573-138981 bp Gene: cd09693:cas5 Type: Type-I Location: 139008-139805 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 139821-140834 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 140854-142329 bp Gene: pfam01881:cas6 Type: other Location: 142334-143071 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 143329-144438 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVHU01000037.1 Clostridioides difficile CD149 gcdCD149.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 32438 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23413-25598 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 23413-23638 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 23413-23638 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 25438-25598 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 25438-25598 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23413-23638 bp]: array | spacers
           [Locus range 25438-25598 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVHU01000057.1 Clostridioides difficile CD149 gcdCD149.contig.56, whole genome shotgun sequence

⇒Summary: seq-len = 53700 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16931-18669 bp Zoom in on locus 1 x27 CRISPR array Location: 16931-18669 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 16931-18669 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16931-18669 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVHU01000050.1 Clostridioides difficile CD149 gcdCD149.contig.49, whole genome shotgun sequence

⇒Summary: seq-len = 204680 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 150298-151644 bp Zoom in on locus 1 x21 CRISPR array Location: 150298-151644 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 150298-151644 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 150298-151644 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVHU01000067.1 Clostridioides difficile CD149 gcdCD149.contig.66, whole genome shotgun sequence

⇒Summary: seq-len = 6389 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4175-4269 bp Zoom in on locus 1 x2 CRISPR array Location: 4175-4269 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 4175-4269 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4175-4269 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)