CRISPRone

CRISPRone report for GCA_000449445.2_ASM44944v2

♦ Seq 1: AVHX01000082.1 Clostridioides difficile CD165 gcdCD165.contig.82, whole genome shotgun sequence

⇒Summary: seq-len = 110826 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 90330-91608 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVHX01000075.1 Clostridioides difficile CD165 gcdCD165.contig.74, whole genome shotgun sequence

⇒Summary: seq-len = 105674 bp; # of CRISPR array = 0; # of cas gene = 5  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVHX01000051.1 Clostridioides difficile CD165 gcdCD165.contig.50, whole genome shotgun sequence

⇒Summary: seq-len = 58113 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 4000-5083 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVHX01000059.1 Clostridioides difficile CD165 gcdCD165.contig.58, whole genome shotgun sequence

⇒Summary: seq-len = 19233 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 6171-6331 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVHX01000043.1 Clostridioides difficile CD165 gcdCD165.contig.42, whole genome shotgun sequence

⇒Summary: seq-len = 29137 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 18264-18689 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVHX01000084.1 Clostridioides difficile CD165 gcdCD165.contig.84, whole genome shotgun sequence

⇒Summary: seq-len = 163056 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 153697-153790 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVHX01000088.1 Clostridioides difficile CD165 gcdCD165.contig.88, whole genome shotgun sequence

⇒Summary: seq-len = 128348 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 119744-120299 bp]: array | spacers
           [Locus range 120402-120628 bp]: array | spacers
           [Locus range 122244-122587 bp]: array | spacers
           [Locus range 124231-124984 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVHX01000037.1 Clostridioides difficile CD165 gcdCD165.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 216952 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 186126-187205 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVHX01000039.1 Clostridioides difficile CD165 gcdCD165.contig.38, whole genome shotgun sequence

⇒Summary: seq-len = 130480 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 124109-124532 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVHX01000077.1 Clostridioides difficile CD165 gcdCD165.contig.76, whole genome shotgun sequence

⇒Summary: seq-len = 64021 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 3973-4530 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)