CRISPRone

CRISPRone report for GCA_000449465.2_ASM44946v2

♦ Seq 1: AVHY01000037.1 Clostridioides difficile CD166 gcdCD166.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 222760 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164429-165775 bp Zoom in on locus 1 x21 CRISPR array Location: 164429-165775 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 164429-165775 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164429-165775 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVHY01000040.1 Clostridioides difficile CD166 gcdCD166.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 37305 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5471-5699 bp Zoom in on locus 1 x4 CRISPR array Location: 5471-5699 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 5471-5699 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5471-5699 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVHY01000033.1 Clostridioides difficile CD166 gcdCD166.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 271945 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185817-185980 bp Zoom in on locus 1 x3 CRISPR array Location: 185817-185980 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 185817-185980 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185817-185980 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVHY01000047.1 Clostridioides difficile CD166 gcdCD166.contig.46, whole genome shotgun sequence

⇒Summary: seq-len = 335616 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252276-260141 bp 2 Locus 2: 333422-333516 bp Zoom in on locus 1 Zoom in on locus 2 x2 Gene: cd09641:cas3HD Type: Type-I Location: 252276-254684 bp Gene: cd09693:cas5 Type: Type-I Location: 254711-255508 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 255524-256537 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 256557-258032 bp Gene: pfam01881:cas6 Type: other Location: 258037-258774 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 259032-260141 bp CRISPR array Location: 333422-333516 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 333422-333516 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 333422-333516 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVHY01000035.1 Clostridioides difficile CD166 gcdCD166.contig.34, whole genome shotgun sequence

⇒Summary: seq-len = 117115 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52813-53237 bp Zoom in on locus 1 x7 CRISPR array Location: 52813-53237 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 52813-53237 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 52813-53237 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVHY01000045.1 Clostridioides difficile CD166 gcdCD166.contig.44, whole genome shotgun sequence

⇒Summary: seq-len = 7129 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5023-5448 bp Zoom in on locus 1 x7 CRISPR array Location: 5023-5448 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5023-5448 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5023-5448 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVHY01000049.1 Clostridioides difficile CD166 gcdCD166.contig.48, whole genome shotgun sequence

⇒Summary: seq-len = 427641 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252779-263024 bp Zoom in on locus 1 x11 CRISPR array Location: 252779-253459 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 252779-253459 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 253643-253909 bp Gene: cd09722:cas1 Type: universal Location: 253912-254892 bp Gene: pfam01930:cas4 Type: Type-I Location: 254895-255413 bp Gene: COG1203:cas3 Type: Type-I Location: 255461-257782 bp Gene: cd09693:cas5 Type: Type-I Location: 257793-258494 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258496-259410 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259412-261289 bp Gene: pfam01881:cas6 Type: other Location: 261295-262032 bp Gene: pfam13280:WYL Type: other Location: 262110-263024 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252779-253459 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVHY01000036.1 Clostridioides difficile CD166 gcdCD166.contig.35, whole genome shotgun sequence

⇒Summary: seq-len = 29481 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18217-18905 bp Zoom in on locus 1 x11 CRISPR array Location: 18217-18905 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 18217-18905 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18217-18905 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVHY01000041.1 Clostridioides difficile CD166 gcdCD166.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 52975 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16420-17961 bp Zoom in on locus 1 x24 CRISPR array Location: 16420-17961 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 16420-17961 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16420-17961 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVHY01000050.1 Clostridioides difficile CD166 gcdCD166.contig.49, whole genome shotgun sequence

⇒Summary: seq-len = 29805 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6409-8593 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 6409-6568 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6409-6568 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8369-8593 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 8369-8593 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6409-6568 bp]: array | spacers
           [Locus range 8369-8593 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)