CRISPRone

CRISPRone report for GCA_000449485.2_ASM44948v2

♦ Seq 1: AVHZ01000032.1 Clostridioides difficile CD169 gcdCD169.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 248634 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4692-5644 bp 2 Locus 2: 167609-175474 bp Zoom in on locus 1 x15 Zoom in on locus 2 CRISPR array Location: 4692-5644 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 4692-5644 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09641:cas3HD Type: Type-I Location: 167609-170017 bp Gene: cd09693:cas5 Type: Type-I Location: 170044-170841 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 170857-171870 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 171890-173365 bp Gene: pfam01881:cas6 Type: other Location: 173370-174107 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 174365-175474 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4692-5644 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVHZ01000027.1 Clostridioides difficile CD169 gcdCD169.contig.26, whole genome shotgun sequence

⇒Summary: seq-len = 498923 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 262796-263151 bp Zoom in on locus 1 x6 CRISPR array Location: 262796-263151 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 262796-263151 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 262796-263151 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVHZ01000023.1 Clostridioides difficile CD169 gcdCD169.contig.22, whole genome shotgun sequence

⇒Summary: seq-len = 184891 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120689-121116 bp Zoom in on locus 1 x7 CRISPR array Location: 120689-121116 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 120689-121116 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120689-121116 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVHZ01000029.1 Clostridioides difficile CD169 gcdCD169.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 59873 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13375-14648 bp Zoom in on locus 1 x20 CRISPR array Location: 13375-14648 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 13375-14648 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13375-14648 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVHZ01000024.1 Clostridioides difficile CD169 gcdCD169.contig.23, whole genome shotgun sequence

⇒Summary: seq-len = 111039 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18179-18671 bp 2 Locus 2: 109544-110364 bp Zoom in on locus 1 x8 Zoom in on locus 2 x13 CRISPR array Location: 18179-18671 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18179-18671 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 109544-110364 bp Num of repeats: 13 Spacers: s8-s19 CRISPR array Location: 109544-110364 bp Num of repeats: 13 Spacers: s8-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18179-18671 bp]: array | spacers
           [Locus range 109544-110364 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVHZ01000017.1 Clostridioides difficile CD169 gcdCD169.contig.16, whole genome shotgun sequence

⇒Summary: seq-len = 15415 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12668-12892 bp Zoom in on locus 1 x4 CRISPR array Location: 12668-12892 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 12668-12892 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12668-12892 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVHZ01000026.1 Clostridioides difficile CD169 gcdCD169.contig.25, whole genome shotgun sequence

⇒Summary: seq-len = 91714 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33003-34741 bp Zoom in on locus 1 x27 CRISPR array Location: 33003-34741 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 33003-34741 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33003-34741 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)