CRISPRone

CRISPRone report for GCA_000449505.2_ASM44950v2

♦ Seq 1: AVIA01000151.1 Clostridioides difficile CD170 gcdCD170.contig.152, whole genome shotgun sequence

⇒Summary: seq-len = 58895 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4177-4734 bp Zoom in on locus 1 x9 CRISPR array Location: 4177-4734 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4177-4734 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4177-4734 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVIA01000085.1 Clostridioides difficile CD170 gcdCD170.contig.84, whole genome shotgun sequence

⇒Summary: seq-len = 28477 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22159-22580 bp Zoom in on locus 1 x7 CRISPR array Location: 22159-22580 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 22159-22580 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22159-22580 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVIA01000145.1 Clostridioides difficile CD170 gcdCD170.contig.146, whole genome shotgun sequence

⇒Summary: seq-len = 17747 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13802-14552 bp Zoom in on locus 1 x12 CRISPR array Location: 13802-14552 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 13802-14552 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13802-14552 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVIA01000078.1 Clostridioides difficile CD170 gcdCD170.contig.77, whole genome shotgun sequence

⇒Summary: seq-len = 107318 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 100695-100988 bp Zoom in on locus 1 x5 CRISPR array Location: 100695-100988 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 100695-100988 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 100695-100988 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVIA01000121.1 Clostridioides difficile CD170 gcdCD170.contig.121, whole genome shotgun sequence

⇒Summary: seq-len = 23092 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5442-5603 bp Zoom in on locus 1 x3 CRISPR array Location: 5442-5603 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5442-5603 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5442-5603 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVIA01000150.1 Clostridioides difficile CD170 gcdCD170.contig.151, whole genome shotgun sequence

⇒Summary: seq-len = 105248 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28316-36181 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28316-30724 bp Gene: cd09693:cas5 Type: Type-I Location: 30751-31548 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31564-32577 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32597-34072 bp Gene: pfam01881:cas6 Type: other Location: 34077-34814 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35072-36181 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVIA01000101.1 Clostridioides difficile CD170 gcdCD170.contig.101, whole genome shotgun sequence

⇒Summary: seq-len = 2787 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2266-2627 bp Zoom in on locus 1 x6 CRISPR array Location: 2266-2627 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2266-2627 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2266-2627 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVIA01000093.1 Clostridioides difficile CD170 gcdCD170.contig.93, whole genome shotgun sequence

⇒Summary: seq-len = 13615 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2940-3167 bp Zoom in on locus 1 x4 CRISPR array Location: 2940-3167 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2940-3167 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2940-3167 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVIA01000135.1 Clostridioides difficile CD170 gcdCD170.contig.136, whole genome shotgun sequence

⇒Summary: seq-len = 25173 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13026-25082 bp Zoom in on locus 1 x46 Gene: cd09725:cas2 Type: universal Location: 13026-13316 bp Gene: cd09722:cas1 Type: universal Location: 13527-14534 bp Gene: pfam01930:cas4 Type: Type-I Location: 14560-15054 bp CRISPR array Location: 15139-18140 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 15139-18140 bp Num of repeats: 46 Spacers: s1-s45 Gene: cd09641:cas3HD Type: Type-I Location: 18330-20888 bp Gene: cd09693:cas5 Type: Type-I Location: 20912-21652 bp Gene: pfam05107:cas7b Type: Type-I Location: 21654-22643 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 22636-24375 bp Gene: cd09652:cas6 Type: other Location: 24387-25082 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 15139-18140 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)