CRISPRone

CRISPRone report for GCA_000449525.2_ASM44952v2

♦ Seq 1: AVIB01000257.1 Clostridioides difficile CD175 gcdCD175.contig.266, whole genome shotgun sequence

⇒Summary: seq-len = 965 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 377-797 bp Zoom in on locus 1 x7 CRISPR array Location: 377-797 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 377-797 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 377-797 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVIB01000127.1 Clostridioides difficile CD175 gcdCD175.contig.133, whole genome shotgun sequence

⇒Summary: seq-len = 19062 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 591-3646 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 591-818 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 591-818 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3485-3646 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 3485-3646 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 591-818 bp]: array | spacers
           [Locus range 3485-3646 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVIB01000464.1 Clostridioides difficile CD175 gcdCD175.contig.477, whole genome shotgun sequence

⇒Summary: seq-len = 10249 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 332-10055 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 332-2740 bp Gene: cd09693:cas5 Type: Type-I Location: 2767-3564 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3580-4593 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 4613-6079 bp Gene: pfam01881:cas6 Type: other Location: 6084-6821 bp Gene: unk Type: unknown Location: 7135-7593 bp Gene: cas14:cas14 Type: Type-V Location: 7621-8793 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 8946-10055 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVIB01000477.1 Clostridioides difficile CD175 gcdCD175.contig.490, whole genome shotgun sequence

⇒Summary: seq-len = 11631 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1222-1447 bp Zoom in on locus 1 x4 CRISPR array Location: 1222-1447 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1222-1447 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1222-1447 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVIB01000163.1 Clostridioides difficile CD175 gcdCD175.contig.170, whole genome shotgun sequence

⇒Summary: seq-len = 11843 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9116-9211 bp Zoom in on locus 1 x2 CRISPR array Location: 9116-9211 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 9116-9211 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9116-9211 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVIB01000195.1 Clostridioides difficile CD175 gcdCD175.contig.203, whole genome shotgun sequence

⇒Summary: seq-len = 8849 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6462-6623 bp Zoom in on locus 1 x3 CRISPR array Location: 6462-6623 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6462-6623 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6462-6623 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVIB01000219.1 Clostridioides difficile CD175 gcdCD175.contig.227, whole genome shotgun sequence

⇒Summary: seq-len = 1006 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 314-934 bp Zoom in on locus 1 x10 CRISPR array Location: 314-934 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 314-934 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 314-934 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)