CRISPRone

CRISPRone report for GCA_000449545.2_ASM44954v2

♦ Seq 1: AVIC01000050.1 Clostridioides difficile CD178 gcdCD178.contig.49, whole genome shotgun sequence

⇒Summary: seq-len = 29142 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18100-18592 bp Zoom in on locus 1 x8 CRISPR array Location: 18100-18592 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18100-18592 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18100-18592 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVIC01000089.1 Clostridioides difficile CD178 gcdCD178.contig.88, whole genome shotgun sequence

⇒Summary: seq-len = 163861 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28283-36148 bp 2 Locus 2: 109415-109770 bp Zoom in on locus 1 Zoom in on locus 2 x6 Gene: cd09641:cas3HD Type: Type-I Location: 28283-30691 bp Gene: cd09693:cas5 Type: Type-I Location: 30718-31515 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31531-32544 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32564-34039 bp Gene: pfam01881:cas6 Type: other Location: 34044-34781 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35039-36148 bp CRISPR array Location: 109415-109770 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 109415-109770 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 109415-109770 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVIC01000058.1 Clostridioides difficile CD178 gcdCD178.contig.57, whole genome shotgun sequence

⇒Summary: seq-len = 31659 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1901-3639 bp Zoom in on locus 1 x27 CRISPR array Location: 1901-3639 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 1901-3639 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1901-3639 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVIC01000054.1 Clostridioides difficile CD178 gcdCD178.contig.53, whole genome shotgun sequence

⇒Summary: seq-len = 105659 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43258-48528 bp Zoom in on locus 1 x4 x13 x3 CRISPR array Location: 43258-43484 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 43258-43484 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 44086-44905 bp Num of repeats: 13 Spacers: s4-s15 CRISPR array Location: 44086-44905 bp Num of repeats: 13 Spacers: s4-s15 CRISPR array Location: 48367-48528 bp Num of repeats: 3 Spacers: s16-s17 CRISPR array Location: 48367-48528 bp Num of repeats: 3 Spacers: s16-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43258-43484 bp]: array | spacers
           [Locus range 44086-44905 bp]: array | spacers
           [Locus range 48367-48528 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVIC01000046.1 Clostridioides difficile CD178 gcdCD178.contig.45, whole genome shotgun sequence

⇒Summary: seq-len = 127044 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120609-121036 bp Zoom in on locus 1 x7 CRISPR array Location: 120609-121036 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 120609-121036 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120609-121036 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVIC01000086.1 Clostridioides difficile CD178 gcdCD178.contig.85, whole genome shotgun sequence

⇒Summary: seq-len = 58205 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54397-55349 bp Zoom in on locus 1 x15 CRISPR array Location: 54397-55349 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 54397-55349 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 54397-55349 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVIC01000075.1 Clostridioides difficile CD178 gcdCD178.contig.74, whole genome shotgun sequence

⇒Summary: seq-len = 48952 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2643-3786 bp Zoom in on locus 1 x18 CRISPR array Location: 2643-3786 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 2643-3786 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2643-3786 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)