CRISPRone

CRISPRone report for GCA_000449565.2_ASM44956v2

♦ Seq 1: AVKE01000011.1 Clostridioides difficile DA00261 gcdDA00261.contig.10, whole genome shotgun sequence

⇒Summary: seq-len = 577033 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138193-139272 bp 2 Locus 2: 350929-351352 bp 3 Locus 3: 461678-462103 bp Zoom in on locus 1 x17 Zoom in on locus 2 x7 Zoom in on locus 3 x7 CRISPR array Location: 138193-139272 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 138193-139272 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 350929-351352 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 350929-351352 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 461678-462103 bp Num of repeats: 7 Spacers: s23-s28 CRISPR array Location: 461678-462103 bp Num of repeats: 7 Spacers: s23-s28 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138193-139272 bp]: array | spacers
           [Locus range 350929-351352 bp]: array | spacers
           [Locus range 461678-462103 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKE01000012.1 Clostridioides difficile DA00261 gcdDA00261.contig.11, whole genome shotgun sequence

⇒Summary: seq-len = 1244651 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63957-65040 bp 2 Locus 2: 386578-386738 bp 3 Locus 3: 747731-748484 bp 4 Locus 4: 910468-918814 bp 5 Locus 5: 992097-992654 bp Zoom in on locus 1 x17 Zoom in on locus 2 x3 Zoom in on locus 3 x12 Zoom in on locus 4 Zoom in on locus 5 x9 CRISPR array Location: 63957-65040 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 63957-65040 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 386578-386738 bp Num of repeats: 3 Spacers: s17-s18 CRISPR array Location: 386578-386738 bp Num of repeats: 3 Spacers: s17-s18 CRISPR array Location: 747731-748484 bp Num of repeats: 12 Spacers: s19-s29 CRISPR array Location: 747731-748484 bp Num of repeats: 12 Spacers: s19-s29 Gene: cd09641:cas3HD Type: Type-I Location: 910468-912876 bp Gene: cd09693:cas5 Type: Type-I Location: 912903-913700 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 913716-914732 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 914752-916227 bp Gene: pfam01881:cas6 Type: other Location: 916232-916969 bp Gene: unk Type: unknown Location: 917070-917246 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 917705-918814 bp CRISPR array Location: 992097-992654 bp Num of repeats: 9 Spacers: s30-s37 CRISPR array Location: 992097-992654 bp Num of repeats: 9 Spacers: s30-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63957-65040 bp]: array | spacers
           [Locus range 386578-386738 bp]: array | spacers
           [Locus range 747731-748484 bp]: array | spacers
           [Locus range 992097-992654 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKE01000013.1 Clostridioides difficile DA00261 gcdDA00261.contig.12, whole genome shotgun sequence

⇒Summary: seq-len = 859712 bp; # of CRISPR array = 5; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 254739-265582 bp 2 Locus 2: 474484-474577 bp 3 Locus 3: 639086-641929 bp Zoom in on locus 1 x20 Zoom in on locus 2 x2 Zoom in on locus 3 x9 x4 x6 CRISPR array Location: 254739-256017 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 254739-256017 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09725:cas2 Type: universal Location: 256201-256467 bp Gene: cd09722:cas1 Type: universal Location: 256470-257450 bp Gene: pfam01930:cas4 Type: Type-I Location: 257453-257971 bp Gene: cd09641:cas3HD Type: Type-I Location: 258019-260340 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 260351-261052 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 261054-261968 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261970-263847 bp Gene: pfam01881:cas6 Type: other Location: 263853-264647 bp Gene: pfam13280:WYL Type: other Location: 264668-265582 bp CRISPR array Location: 474484-474577 bp Num of repeats: 2 Spacers: s20-s20 CRISPR array Location: 474484-474577 bp Num of repeats: 2 Spacers: s20-s20 CRISPR array Location: 639086-639641 bp Num of repeats: 9 Spacers: s21-s28 CRISPR array Location: 639086-639641 bp Num of repeats: 9 Spacers: s21-s28 CRISPR array Location: 639744-639970 bp Num of repeats: 4 Spacers: s29-s31 CRISPR array Location: 639744-639970 bp Num of repeats: 4 Spacers: s29-s31 CRISPR array Location: 641586-641929 bp Num of repeats: 6 Spacers: s32-s36 CRISPR array Location: 641586-641929 bp Num of repeats: 6 Spacers: s32-s36 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 254739-256017 bp]: array | spacers
           [Locus range 474484-474577 bp]: array | spacers
           [Locus range 639086-639641 bp]: array | spacers
           [Locus range 639744-639970 bp]: array | spacers
           [Locus range 641586-641929 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)