CRISPRone

CRISPRone report for GCA_000449585.2_ASM44958v2

♦ Seq 1: AVID01000032.1 Clostridioides difficile CD181 gcdCD181.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 188315 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185136-185297 bp Zoom in on locus 1 x3 CRISPR array Location: 185136-185297 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 185136-185297 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185136-185297 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVID01000067.1 Clostridioides difficile CD181 gcdCD181.contig.67, whole genome shotgun sequence

⇒Summary: seq-len = 4368 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1063-1484 bp Zoom in on locus 1 x7 CRISPR array Location: 1063-1484 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1063-1484 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1063-1484 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVID01000076.1 Clostridioides difficile CD181 gcdCD181.contig.76, whole genome shotgun sequence

⇒Summary: seq-len = 155669 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90493-100606 bp Zoom in on locus 1 x9 CRISPR array Location: 90493-91041 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 90493-91041 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 91225-91491 bp Gene: cd09722:cas1 Type: universal Location: 91494-92474 bp Gene: pfam01930:cas4 Type: Type-I Location: 92558-92995 bp Gene: COG1203:cas3 Type: Type-I Location: 93043-95364 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 95375-96076 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 96078-96992 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 96994-98871 bp Gene: pfam01881:cas6 Type: other Location: 98877-99671 bp Gene: pfam13280:WYL Type: other Location: 99692-100606 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 90493-91041 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVID01000074.1 Clostridioides difficile CD181 gcdCD181.contig.74, whole genome shotgun sequence

⇒Summary: seq-len = 9203 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1248-6915 bp Zoom in on locus 1 x2 x5 x5 CRISPR array Location: 1248-1340 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1248-1340 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 3688-3980 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 3688-3980 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 6623-6915 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 6623-6915 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1248-1340 bp]: array | spacers
           [Locus range 3688-3980 bp]: array | spacers
           [Locus range 6623-6915 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVID01000069.1 Clostridioides difficile CD181 gcdCD181.contig.69, whole genome shotgun sequence

⇒Summary: seq-len = 58748 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4124-4619 bp Zoom in on locus 1 x8 CRISPR array Location: 4124-4619 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 4124-4619 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4124-4619 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVID01000044.1 Clostridioides difficile CD181 gcdCD181.contig.44, whole genome shotgun sequence

⇒Summary: seq-len = 152702 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120100-121511 bp Zoom in on locus 1 x22 CRISPR array Location: 120100-121511 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 120100-121511 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120100-121511 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVID01000053.1 Clostridioides difficile CD181 gcdCD181.contig.53, whole genome shotgun sequence

⇒Summary: seq-len = 17403 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 486-579 bp Zoom in on locus 1 x2 CRISPR array Location: 486-579 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 486-579 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 486-579 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVID01000068.1 Clostridioides difficile CD181 gcdCD181.contig.68, whole genome shotgun sequence

⇒Summary: seq-len = 239198 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 162264-170129 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 162264-164672 bp Gene: cd09693:cas5 Type: Type-I Location: 164699-165496 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 165512-166525 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 166545-168020 bp Gene: pfam01881:cas6 Type: other Location: 168025-168762 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 169020-170129 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVID01000040.1 Clostridioides difficile CD181 gcdCD181.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 12393 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3160-3652 bp Zoom in on locus 1 x8 CRISPR array Location: 3160-3652 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3160-3652 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3160-3652 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVID01000035.1 Clostridioides difficile CD181 gcdCD181.contig.34, whole genome shotgun sequence

⇒Summary: seq-len = 190138 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113775-114594 bp Zoom in on locus 1 x13 CRISPR array Location: 113775-114594 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 113775-114594 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 113775-114594 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)