CRISPRone

CRISPRone report for GCA_000449665.2_ASM44966v2

♦ Seq 1: AVIG01000021.1 Clostridioides difficile CD201 gcdCD201.contig.20, whole genome shotgun sequence

⇒Summary: seq-len = 238065 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 178261-178556 bp Zoom in on locus 1 x5 CRISPR array Location: 178261-178556 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 178261-178556 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 178261-178556 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVIG01000042.1 Clostridioides difficile CD201 gcdCD201.contig.41, whole genome shotgun sequence

⇒Summary: seq-len = 128369 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77777-89011 bp Zoom in on locus 1 x16 x9 CRISPR array Location: 77777-78787 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 77777-78787 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 78890-79446 bp Num of repeats: 9 Spacers: s16-s23 CRISPR array Location: 78890-79446 bp Num of repeats: 9 Spacers: s16-s23 Gene: cd09725:cas2 Type: universal Location: 79630-79896 bp Gene: cd09722:cas1 Type: universal Location: 79899-80879 bp Gene: pfam01930:cas4 Type: Type-I Location: 80882-81400 bp Gene: COG1203:cas3 Type: Type-I Location: 81448-83769 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 83780-84481 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 84483-85397 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 85399-87276 bp Gene: pfam01881:cas6 Type: other Location: 87282-88076 bp Gene: pfam13280:WYL Type: other Location: 88097-89011 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 77777-78787 bp]: array | spacers
           [Locus range 78890-79446 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVIG01000020.1 Clostridioides difficile CD201 gcdCD201.contig.19, whole genome shotgun sequence

⇒Summary: seq-len = 161913 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 131702-132061 bp Zoom in on locus 1 x6 CRISPR array Location: 131702-132061 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 131702-132061 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 131702-132061 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVIG01000034.1 Clostridioides difficile CD201 gcdCD201.contig.33, whole genome shotgun sequence

⇒Summary: seq-len = 223868 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 219439-220453 bp Zoom in on locus 1 x16 CRISPR array Location: 219439-220453 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 219439-220453 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 219439-220453 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVIG01000027.1 Clostridioides difficile CD201 gcdCD201.contig.26, whole genome shotgun sequence

⇒Summary: seq-len = 73006 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18826-20042 bp Zoom in on locus 1 x19 CRISPR array Location: 18826-20042 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 18826-20042 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18826-20042 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVIG01000037.1 Clostridioides difficile CD201 gcdCD201.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 114682 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4163-4720 bp Zoom in on locus 1 x9 CRISPR array Location: 4163-4720 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4163-4720 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4163-4720 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVIG01000023.1 Clostridioides difficile CD201 gcdCD201.contig.22, whole genome shotgun sequence

⇒Summary: seq-len = 29817 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18302-19260 bp Zoom in on locus 1 x15 CRISPR array Location: 18302-19260 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 18302-19260 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18302-19260 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVIG01000029.1 Clostridioides difficile CD201 gcdCD201.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 102969 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5445-5604 bp 2 Locus 2: 56517-57923 bp Zoom in on locus 1 x3 Zoom in on locus 2 x22 CRISPR array Location: 5445-5604 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5445-5604 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 56517-57923 bp Num of repeats: 22 Spacers: s3-s23 CRISPR array Location: 56517-57923 bp Num of repeats: 22 Spacers: s3-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5445-5604 bp]: array | spacers
           [Locus range 56517-57923 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVIG01000036.1 Clostridioides difficile CD201 gcdCD201.contig.35, whole genome shotgun sequence

⇒Summary: seq-len = 212888 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135963-143828 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 135963-138371 bp Gene: cd09693:cas5 Type: Type-I Location: 138398-139195 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 139211-140224 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 140244-141719 bp Gene: pfam01881:cas6 Type: other Location: 141724-142461 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 142719-143828 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)