CRISPRone

CRISPRone report for GCA_000449725.2_ASM44972v2

♦ Seq 1: AVIJ01000023.1 Clostridioides difficile CD212 gcdCD212.contig.22, whole genome shotgun sequence

⇒Summary: seq-len = 98632 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1125-1284 bp 2 Locus 2: 52197-53603 bp Zoom in on locus 1 x3 Zoom in on locus 2 x22 CRISPR array Location: 1125-1284 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1125-1284 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 52197-53603 bp Num of repeats: 22 Spacers: s3-s23 CRISPR array Location: 52197-53603 bp Num of repeats: 22 Spacers: s3-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1125-1284 bp]: array | spacers
           [Locus range 52197-53603 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVIJ01000022.1 Clostridioides difficile CD212 gcdCD212.contig.21, whole genome shotgun sequence

⇒Summary: seq-len = 240914 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39972-41188 bp Zoom in on locus 1 x19 CRISPR array Location: 39972-41188 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 39972-41188 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 39972-41188 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVIJ01000020.1 Clostridioides difficile CD212 gcdCD212.contig.19, whole genome shotgun sequence

⇒Summary: seq-len = 29477 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17945-19035 bp Zoom in on locus 1 x17 CRISPR array Location: 17945-19035 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 17945-19035 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17945-19035 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVIJ01000018.1 Clostridioides difficile CD212 gcdCD212.contig.17, whole genome shotgun sequence

⇒Summary: seq-len = 547239 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 380665-380960 bp Zoom in on locus 1 x5 CRISPR array Location: 380665-380960 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 380665-380960 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 380665-380960 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVIJ01000029.1 Clostridioides difficile CD212 gcdCD212.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 367965 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77759-88929 bp Zoom in on locus 1 x25 CRISPR array Location: 77759-79364 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 77759-79364 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 79548-79814 bp Gene: cd09722:cas1 Type: universal Location: 79817-80797 bp Gene: pfam01930:cas4 Type: Type-I Location: 80800-81318 bp Gene: COG1203:cas3 Type: Type-I Location: 81366-83687 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 83698-84399 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 84401-85315 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 85317-87194 bp Gene: pfam01881:cas6 Type: other Location: 87200-87994 bp Gene: pfam13280:WYL Type: other Location: 88015-88929 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 77759-79364 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVIJ01000027.1 Clostridioides difficile CD212 gcdCD212.contig.26, whole genome shotgun sequence

⇒Summary: seq-len = 363096 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117702-118259 bp Zoom in on locus 1 x9 CRISPR array Location: 117702-118259 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 117702-118259 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 117702-118259 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVIJ01000025.1 Clostridioides difficile CD212 gcdCD212.contig.24, whole genome shotgun sequence

⇒Summary: seq-len = 8651 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5020-5308 bp Zoom in on locus 1 x5 CRISPR array Location: 5020-5308 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5020-5308 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5020-5308 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVIJ01000026.1 Clostridioides difficile CD212 gcdCD212.contig.25, whole genome shotgun sequence

⇒Summary: seq-len = 239337 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158715-166580 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 158715-161123 bp Gene: cd09693:cas5 Type: Type-I Location: 161150-161947 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 161963-162976 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 162996-164471 bp Gene: pfam01881:cas6 Type: other Location: 164476-165213 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 165471-166580 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)