CRISPRone

CRISPRone report for GCA_000449765.2_ASM44976v2

♦ Seq 1: AVIL01000074.1 Clostridioides difficile 655 gcd655.contig.73, whole genome shotgun sequence

⇒Summary: seq-len = 94711 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88463-88819 bp Zoom in on locus 1 x6 CRISPR array Location: 88463-88819 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 88463-88819 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 88463-88819 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVIL01000094.1 Clostridioides difficile 655 gcd655.contig.93, whole genome shotgun sequence

⇒Summary: seq-len = 2800 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2298-2659 bp Zoom in on locus 1 x6 CRISPR array Location: 2298-2659 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2298-2659 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2298-2659 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVIL01000156.1 Clostridioides difficile 655 gcd655.contig.155, whole genome shotgun sequence

⇒Summary: seq-len = 77745 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19559-27424 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 19559-21967 bp Gene: cd09693:cas5 Type: Type-I Location: 21994-22791 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 22807-23820 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 23840-25315 bp Gene: pfam01881:cas6 Type: other Location: 25320-26057 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 26315-27424 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVIL01000159.1 Clostridioides difficile 655 gcd655.contig.158, whole genome shotgun sequence

⇒Summary: seq-len = 54826 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182-739 bp Zoom in on locus 1 x9 CRISPR array Location: 182-739 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 182-739 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182-739 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVIL01000070.1 Clostridioides difficile 655 gcd655.contig.69, whole genome shotgun sequence

⇒Summary: seq-len = 68307 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40635-40928 bp Zoom in on locus 1 x5 CRISPR array Location: 40635-40928 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 40635-40928 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 40635-40928 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVIL01000083.1 Clostridioides difficile 655 gcd655.contig.82, whole genome shotgun sequence

⇒Summary: seq-len = 13696 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3021-3248 bp Zoom in on locus 1 x4 CRISPR array Location: 3021-3248 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3021-3248 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3021-3248 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVIL01000115.1 Clostridioides difficile 655 gcd655.contig.114, whole genome shotgun sequence

⇒Summary: seq-len = 2775 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 647-808 bp Zoom in on locus 1 x3 CRISPR array Location: 647-808 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 647-808 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 647-808 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVIL01000058.1 Clostridioides difficile 655 gcd655.contig.57, whole genome shotgun sequence

⇒Summary: seq-len = 57893 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42139-45556 bp Zoom in on locus 1 x5 x13 CRISPR array Location: 42139-42430 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 42139-42430 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 44733-45556 bp Num of repeats: 13 Spacers: s5-s16 CRISPR array Location: 44733-45556 bp Num of repeats: 13 Spacers: s5-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 42139-42430 bp]: array | spacers
           [Locus range 44733-45556 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVIL01000004.1 Clostridioides difficile 655 gcd655.contig.3, whole genome shotgun sequence

⇒Summary: seq-len = 12473 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 344-12334 bp Zoom in on locus 1 x45 Gene: cd09725:cas2 Type: universal Location: 344-634 bp Gene: cd09722:cas1 Type: universal Location: 845-1852 bp Gene: pfam01930:cas4 Type: Type-I Location: 1878-2372 bp CRISPR array Location: 2457-5392 bp Num of repeats: 45 Spacers: s1-s44 CRISPR array Location: 2457-5392 bp Num of repeats: 45 Spacers: s1-s44 Gene: cd09641:cas3HD Type: Type-I Location: 5582-8140 bp Gene: cd09693:cas5 Type: Type-I Location: 8164-8904 bp Gene: pfam05107:cas7b Type: Type-I Location: 8906-9895 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 9888-11627 bp Gene: cd09652:cas6 Type: other Location: 11639-12334 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2457-5392 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVIL01000146.1 Clostridioides difficile 655 gcd655.contig.145, whole genome shotgun sequence

⇒Summary: seq-len = 16291 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12229-12914 bp Zoom in on locus 1 x11 CRISPR array Location: 12229-12914 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 12229-12914 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12229-12914 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)